Wall clock time and date at job start Mon Mar 30 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46680 * 2 1 4 4 C 1.50707 * 109.46950 * 240.00635 * 2 1 3 5 5 H 1.07995 * 119.99346 * 239.99696 * 4 2 1 6 6 C 1.37871 * 120.00359 * 59.99668 * 4 2 1 7 7 N 1.31521 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46944 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47193 * 120.00022 * 8 6 4 11 11 H 1.48509 * 109.47104 * 240.00296 * 8 6 4 12 12 C 1.50698 * 109.47144 * 120.00559 * 2 1 3 13 13 N 1.31130 * 126.54646 * 239.99859 * 12 2 1 14 14 C 1.34492 * 105.61399 * 179.97438 * 13 12 2 15 15 C 1.50700 * 126.29104 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47086 * 269.98022 * 15 14 13 17 17 C 1.33641 * 126.04085 * 89.99742 * 16 15 14 18 18 N 1.31779 * 114.49910 * 180.02562 * 17 16 15 19 19 C 1.29032 * 117.12487 * 359.97438 * 18 17 16 20 20 S 1.70974 * 110.16811 * 359.72715 * 19 18 17 21 21 N 1.29954 * 107.42242 * 359.97438 * 14 13 12 22 22 O 1.21293 * 110.25286 * 0.02562 * 21 14 13 23 23 H 1.09000 * 109.47453 * 59.99793 * 1 2 3 24 24 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47204 * 299.99148 * 1 2 3 26 26 H 0.97000 * 119.99674 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.47013 * 29.97723 * 15 14 13 28 28 H 1.08996 * 109.47115 * 149.97626 * 15 14 13 29 29 H 1.07994 * 122.74743 * 359.97438 * 17 16 15 30 30 H 1.08003 * 124.91028 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1660 -1.5863 -4.8161 11 1 3.1465 -0.1870 -4.8166 12 6 2.0323 -0.7105 1.2304 13 7 2.7893 -0.2008 2.1721 14 6 2.9810 -1.1933 3.0592 15 6 3.7873 -1.1107 4.3297 16 6 5.2164 -1.4938 4.0435 17 6 6.1958 -0.6610 3.6785 18 7 7.3630 -1.2414 3.4854 19 6 7.4229 -2.5174 3.6676 20 16 5.8930 -3.1180 4.1385 21 7 2.3423 -2.2364 2.6202 22 8 1.7908 -1.9801 1.5707 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7088 1.1616 -3.4844 27 1 3.7547 -0.0915 4.7151 28 1 3.3696 -1.7927 5.0702 29 1 6.0429 0.4005 3.5515 30 1 8.3120 -3.1181 3.5453 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:36 Heat of formation + Delta-G solvation = 84.393845 kcal Electronic energy + Delta-G solvation = -17103.148633 eV Core-core repulsion = 14220.795457 eV Total energy + Delta-G solvation = -2882.353176 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.43148 -40.67127 -37.21646 -36.82015 -34.44874 -33.10868 -31.40444 -28.77247 -27.38036 -25.84280 -25.24611 -23.98865 -21.96131 -20.93943 -19.39924 -18.86748 -18.49857 -17.89850 -16.94117 -16.58904 -15.97260 -15.66376 -14.96254 -14.94555 -14.68009 -14.51731 -13.88237 -13.73372 -13.33174 -13.07591 -12.88455 -12.57110 -12.43818 -12.28884 -12.23878 -12.09295 -11.87180 -11.37392 -10.77726 -10.65228 -10.57396 -10.36040 -10.00011 -8.23490 -6.39690 -0.40106 0.23249 0.34546 0.70135 1.29740 1.42042 1.45387 1.55764 1.76825 2.05162 2.38544 2.79959 3.06181 3.16899 3.37725 3.77758 4.01012 4.20251 4.32922 4.52911 4.65008 4.73930 4.80667 4.89911 4.98789 5.06093 5.10689 5.40579 5.64327 5.82904 6.03980 6.61952 6.64130 7.23638 7.29685 8.82392 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.005164 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.052611 B = 5420.840176 C = 6003.757806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.126 3.874 3 H 0.055 0.945 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.033 3.967 7 N -0.903 5.903 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.276 1.276 12 C 0.236 3.764 13 N -0.520 5.520 14 C 0.168 3.832 15 C 0.060 3.940 16 C -0.236 4.236 17 C 0.040 3.960 18 N -0.504 5.504 19 C 0.022 3.978 20 S 0.154 5.846 21 N -0.411 5.411 22 O 0.054 5.946 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.271 0.729 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.181 0.819 30 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -5.794 13.065 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.073 0.927 4 C -0.581 4.581 5 H 0.067 0.933 6 C -0.169 4.169 7 N -0.540 5.540 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.017 3.983 13 N -0.254 5.254 14 C -0.106 4.106 15 C 0.019 3.981 16 C -0.358 4.358 17 C -0.112 4.112 18 N -0.217 5.217 19 C -0.275 4.275 20 S 0.408 5.592 21 N -0.126 5.126 22 O 0.003 5.997 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.198 0.802 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.314 -6.849 13.631 16.918 hybrid contribution 0.091 0.713 -1.324 1.506 sum 7.405 -6.136 12.307 15.619 Atomic orbital electron populations 1.21696 0.94379 1.00776 1.01719 1.17633 0.94797 0.94155 0.82883 0.92736 1.21049 1.33339 1.13197 0.90548 0.93294 1.25535 0.94555 0.95423 1.01364 1.69939 1.36023 1.23022 1.25018 0.85470 0.78469 0.78506 0.79053 1.19985 1.19539 1.20187 1.29832 0.90329 0.81248 0.96891 1.71953 1.18927 1.30463 1.04081 1.26179 0.99080 0.85223 1.00097 1.18352 0.84807 1.06754 0.88203 1.25737 1.00584 0.96698 1.12796 1.22015 0.86664 1.02527 0.99959 1.66389 1.26616 1.10290 1.18443 1.29054 1.03136 0.93762 1.01499 1.83982 1.04632 1.08621 1.62014 1.74508 1.14632 1.24503 0.98910 1.85237 1.54947 1.30442 1.29063 0.89756 0.93951 0.94412 0.91951 0.84609 0.85730 0.80192 0.75034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.95 71.98 0.64 -5.08 16 2 C 0.13 6.17 2.77 -12.28 -0.03 6.13 16 3 H 0.05 2.87 8.14 -2.39 -0.02 2.85 16 4 C -0.54 -28.89 8.55 25.60 0.22 -28.67 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.71 5.30 84.65 0.45 2.16 16 7 N -0.90 -47.92 11.32 21.45 0.24 -47.67 16 8 Si 0.96 41.69 29.54 68.60 2.03 43.71 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 C 0.24 10.69 6.96 88.38 0.61 11.30 16 13 N -0.52 -21.84 11.55 -303.19 -3.50 -25.34 16 14 C 0.17 6.04 7.45 138.46 1.03 7.07 16 15 C 0.06 1.48 6.38 29.10 0.19 1.66 16 16 C -0.24 -6.03 5.83 24.64 0.14 -5.89 16 17 C 0.04 1.08 11.25 83.66 0.94 2.03 16 18 N -0.50 -13.75 10.54 -203.75 -2.15 -15.89 16 19 C 0.02 0.46 12.23 130.65 1.60 2.06 16 20 S 0.15 3.30 23.22 -56.49 -1.31 1.99 16 21 N -0.41 -16.22 12.16 -60.32 -0.73 -16.95 16 22 O 0.05 2.39 11.31 74.85 0.85 3.24 16 23 H 0.08 4.10 6.07 -2.39 -0.01 4.09 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.14 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -61.16 285.57 2.38 -58.78 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.17 Total: 5.39 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.79 Total: -7.23 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -6.14 Total: -105.87 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.85 Total: 3.24 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -61.16 2.38 -58.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.170 kcal (2) G-P(sol) polarization free energy of solvation -61.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds