Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 N 1.31128 * 126.55488 * 119.99870 * 12 2 1 14 14 C 1.34498 * 105.61793 * 179.97438 * 13 12 2 15 15 C 1.50697 * 126.28696 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47587 * 90.00256 * 15 14 13 17 17 C 1.33635 * 126.03895 * 89.99122 * 16 15 14 18 18 N 1.31780 * 114.49784 * 180.02562 * 17 16 15 19 19 C 1.29028 * 117.12644 * 0.02562 * 18 17 16 20 20 S 1.70981 * 110.16455 * 359.72126 * 19 18 17 21 21 N 1.29949 * 107.42220 * 359.97438 * 14 13 12 22 22 O 1.21300 * 110.24901 * 359.71113 * 21 14 13 23 23 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 24 24 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 25 25 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46836 * 209.99617 * 15 14 13 28 28 H 1.08996 * 109.47402 * 329.99173 * 15 14 13 29 29 H 1.07997 * 122.75214 * 0.02562 * 17 16 15 30 30 H 1.08001 * 124.91887 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.8006 -1.1309 4.0103 10 1 1.8211 -0.4239 5.2204 11 1 1.8144 -2.5223 4.0055 12 6 2.0323 -0.7104 -1.2305 13 7 2.7892 -0.2007 -2.1722 14 6 2.9819 -1.1935 -3.0588 15 6 3.7885 -1.1109 -4.3290 16 6 5.2179 -1.4926 -4.0422 17 6 5.7309 -2.7248 -4.1075 18 7 7.0122 -2.7998 -3.8088 19 6 7.6085 -1.6995 -3.4948 20 16 6.5093 -0.3919 -3.5674 21 7 2.3446 -2.2371 -2.6190 22 8 1.7974 -1.9823 -1.5668 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7136 1.1647 3.4844 27 1 3.3717 -1.7939 -5.0692 28 1 3.7549 -0.0922 -4.7152 29 1 5.1436 -3.5884 -4.3824 30 1 8.6521 -1.6158 -3.2296 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = 103.045263 kcal Electronic energy + Delta-G solvation = -17102.873138 eV Core-core repulsion = 14221.328747 eV Total energy + Delta-G solvation = -2881.544390 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.81876 -39.66251 -35.67047 -35.02883 -32.94050 -31.51464 -29.67526 -27.70391 -25.41530 -24.75799 -23.50451 -22.46132 -20.27474 -19.96157 -18.16092 -17.33006 -16.82125 -16.11150 -15.56776 -15.06562 -14.76373 -14.04414 -13.88824 -13.62463 -13.42271 -12.92734 -12.75163 -11.90579 -11.72565 -11.25886 -11.24764 -11.03752 -10.85800 -10.69446 -10.45831 -10.33714 -10.11716 -9.72507 -9.53704 -9.33768 -9.03527 -8.92266 -8.59687 -6.24898 -4.34315 0.59811 1.29212 1.70338 1.92091 2.73734 2.91993 3.24008 3.27991 3.32256 3.77683 4.16640 4.27363 4.29765 4.56588 4.80335 5.07800 5.15633 5.22602 5.41164 5.63966 5.91810 6.08735 6.45146 6.53509 6.61778 6.79461 6.82760 7.34435 7.58991 7.61138 7.76585 7.96894 8.64531 8.89319 9.32084 10.81294 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.005274 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.353834 B = 5307.826465 C = 5887.060137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.125 3.875 3 H 0.076 0.924 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.246 3.754 13 N -0.512 5.512 14 C 0.154 3.846 15 C 0.058 3.942 16 C -0.216 4.216 17 C 0.042 3.958 18 N -0.473 5.473 19 C 0.008 3.992 20 S 0.152 5.848 21 N -0.402 5.402 22 O 0.072 5.928 23 H 0.101 0.899 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.268 0.732 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.176 0.824 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -1.100 -11.600 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.105 3.895 3 H 0.093 0.907 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.029 3.971 13 N -0.246 5.246 14 C -0.120 4.120 15 C 0.017 3.983 16 C -0.339 4.339 17 C -0.110 4.110 18 N -0.186 5.186 19 C -0.289 4.289 20 S 0.405 5.595 21 N -0.114 5.114 22 O 0.016 5.984 23 H 0.119 0.881 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.193 0.807 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.694 -0.847 -11.900 14.196 hybrid contribution -0.122 -1.189 0.850 1.467 sum 7.572 -2.036 -11.050 13.549 Atomic orbital electron populations 1.21857 0.95528 1.00667 1.01644 1.17838 0.93852 0.95285 0.82544 0.90653 1.20823 1.33225 1.13095 0.89213 0.92074 1.24863 0.94466 0.94828 0.99020 1.69840 1.35703 1.22148 1.24399 0.86459 0.79328 0.79834 0.81372 1.20037 1.20898 1.19860 1.30185 0.89492 0.80700 0.96766 1.71942 1.19154 1.29585 1.03874 1.25331 1.00356 0.86693 0.99585 1.18058 0.85366 1.04495 0.90403 1.25711 1.00268 0.96784 1.11088 1.21782 0.90284 0.96972 1.01955 1.66340 1.09185 1.29100 1.14014 1.28414 1.05077 0.91195 1.04183 1.84198 1.00705 1.13157 1.61464 1.74511 1.13852 1.23998 0.99007 1.85258 1.54538 1.30589 1.27969 0.88057 0.96390 0.94171 0.92240 0.87351 0.87645 0.80728 0.78482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.95 37.16 0.33 -2.76 16 2 C 0.13 3.01 2.77 -92.93 -0.26 2.75 16 3 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 4 C -0.52 -13.74 8.55 -34.44 -0.29 -14.03 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -23.30 11.33 55.43 0.63 -22.67 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 C 0.25 5.55 6.96 -13.06 -0.09 5.46 16 13 N -0.51 -10.84 11.55 -9.87 -0.11 -10.95 16 14 C 0.15 2.86 7.45 -156.37 -1.17 1.70 16 15 C 0.06 0.78 6.38 -29.03 -0.19 0.60 16 16 C -0.22 -2.96 5.83 -35.92 -0.21 -3.17 16 17 C 0.04 0.58 11.25 -19.19 -0.22 0.37 16 18 N -0.47 -6.73 10.54 -15.75 -0.17 -6.90 16 19 C 0.01 0.10 12.23 51.58 0.63 0.73 16 20 S 0.15 1.87 23.22 -107.50 -2.50 -0.63 16 21 N -0.40 -8.13 12.16 30.90 0.38 -7.76 16 22 O 0.07 1.59 11.31 18.10 0.20 1.80 16 23 H 0.10 2.43 6.08 -51.93 -0.32 2.12 16 24 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.18 2.16 8.06 -52.49 -0.42 1.73 16 30 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 285.59 15.07 4.30 4.30 Total: -1.00 -28.75 285.59 -6.65 -35.40 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -2.82 Total: -1.34 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.55 Total: -6.60 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.72 Total: -48.28 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.50 Total: -0.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.75 -6.65 -35.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.443 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds