Wall clock time and date at job start Mon Mar 30 2020 06:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 N 1.31128 * 126.55488 * 119.99870 * 12 2 1 14 14 C 1.34498 * 105.61793 * 179.97438 * 13 12 2 15 15 C 1.50697 * 126.28696 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47587 * 90.00256 * 15 14 13 17 17 C 1.33635 * 126.03895 * 89.99122 * 16 15 14 18 18 N 1.31780 * 114.49784 * 180.02562 * 17 16 15 19 19 C 1.29028 * 117.12644 * 0.02562 * 18 17 16 20 20 S 1.70981 * 110.16455 * 359.72126 * 19 18 17 21 21 N 1.29949 * 107.42220 * 359.97438 * 14 13 12 22 22 O 1.21300 * 110.24901 * 359.71113 * 21 14 13 23 23 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 24 24 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 25 25 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46836 * 209.99617 * 15 14 13 28 28 H 1.08996 * 109.47402 * 329.99173 * 15 14 13 29 29 H 1.07997 * 122.75214 * 0.02562 * 17 16 15 30 30 H 1.08001 * 124.91887 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.8006 -1.1309 4.0103 10 1 1.8211 -0.4239 5.2204 11 1 1.8144 -2.5223 4.0055 12 6 2.0323 -0.7104 -1.2305 13 7 2.7892 -0.2007 -2.1722 14 6 2.9819 -1.1935 -3.0588 15 6 3.7885 -1.1109 -4.3290 16 6 5.2179 -1.4926 -4.0422 17 6 5.7309 -2.7248 -4.1075 18 7 7.0122 -2.7998 -3.8088 19 6 7.6085 -1.6995 -3.4948 20 16 6.5093 -0.3919 -3.5674 21 7 2.3446 -2.2371 -2.6190 22 8 1.7974 -1.9823 -1.5668 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7136 1.1647 3.4844 27 1 3.3717 -1.7939 -5.0692 28 1 3.7549 -0.0922 -4.7152 29 1 5.1436 -3.5884 -4.3824 30 1 8.6521 -1.6158 -3.2296 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597135.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:38 Heat of formation + Delta-G solvation = 84.490904 kcal Electronic energy + Delta-G solvation = -17103.677715 eV Core-core repulsion = 14221.328747 eV Total energy + Delta-G solvation = -2882.348968 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.42873 -40.66432 -37.21545 -36.81511 -34.45289 -33.10260 -31.37215 -28.80076 -27.37154 -25.84269 -25.24470 -24.00448 -21.79750 -21.10069 -19.35580 -18.82794 -18.51396 -17.93049 -16.92881 -16.55914 -15.97605 -15.67066 -14.96041 -14.93699 -14.65806 -14.52974 -13.86713 -13.72382 -13.32221 -13.07361 -12.87101 -12.59147 -12.42784 -12.26504 -12.25817 -12.07526 -11.86860 -11.37908 -10.76428 -10.65375 -10.56756 -10.35094 -9.99708 -8.22725 -6.38992 -0.39401 0.24685 0.35575 0.73427 1.29853 1.44740 1.45885 1.53786 1.76056 2.05850 2.38982 2.80386 3.06766 3.17014 3.37451 3.76933 4.03469 4.23549 4.32899 4.43904 4.66134 4.74734 4.81311 4.89770 4.99023 5.06265 5.10353 5.40713 5.64672 5.83014 6.04252 6.62106 6.63297 7.24067 7.30150 8.82763 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.005274 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.353834 B = 5307.826465 C = 5887.060137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.127 3.873 3 H 0.056 0.944 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.034 3.966 7 N -0.902 5.902 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.271 1.271 12 C 0.236 3.764 13 N -0.520 5.520 14 C 0.168 3.832 15 C 0.059 3.941 16 C -0.236 4.236 17 C 0.037 3.963 18 N -0.503 5.503 19 C 0.019 3.981 20 S 0.158 5.842 21 N -0.410 5.410 22 O 0.053 5.947 23 H 0.084 0.916 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.271 0.729 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.184 0.816 30 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 -1.301 -12.130 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.074 0.926 4 C -0.584 4.584 5 H 0.067 0.933 6 C -0.168 4.168 7 N -0.539 5.539 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.017 3.983 13 N -0.255 5.255 14 C -0.106 4.106 15 C 0.019 3.981 16 C -0.358 4.358 17 C -0.115 4.115 18 N -0.217 5.217 19 C -0.277 4.277 20 S 0.412 5.588 21 N -0.125 5.125 22 O 0.002 5.998 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.201 0.799 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.600 -1.046 -12.418 15.141 hybrid contribution -0.319 -1.103 0.947 1.488 sum 8.280 -2.149 -11.471 14.310 Atomic orbital electron populations 1.21698 0.94461 1.00717 1.01716 1.17623 0.94726 0.94194 0.82820 0.92616 1.20993 1.33676 1.13118 0.90567 0.93297 1.25521 0.94511 0.95424 1.01298 1.69922 1.36019 1.22821 1.25143 0.85602 0.78636 0.78915 0.78538 1.20101 1.19879 1.19608 1.29844 0.90359 0.81165 0.96916 1.71956 1.18873 1.30454 1.04169 1.26178 0.99086 0.85243 1.00112 1.18349 0.84762 1.06577 0.88445 1.25733 1.00558 0.97180 1.12369 1.22012 0.90510 0.97432 1.01542 1.66392 1.09550 1.30178 1.15558 1.29040 1.06344 0.90314 1.02009 1.84185 1.00460 1.13074 1.61106 1.74509 1.14698 1.24555 0.98700 1.85243 1.55306 1.30327 1.28914 0.89750 0.94415 0.94043 0.91926 0.84608 0.85739 0.79944 0.75131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.95 71.98 0.64 -5.08 16 2 C 0.13 6.18 2.77 -12.29 -0.03 6.15 16 3 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 4 C -0.55 -28.85 8.55 25.60 0.22 -28.63 16 5 H 0.05 2.65 7.74 -2.92 -0.02 2.62 16 6 C 0.03 1.77 5.30 84.66 0.45 2.22 16 7 N -0.90 -47.60 11.33 21.45 0.24 -47.36 16 8 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 C 0.24 10.65 6.96 88.38 0.61 11.26 16 13 N -0.52 -21.69 11.55 -303.20 -3.50 -25.19 16 14 C 0.17 6.02 7.45 138.46 1.03 7.05 16 15 C 0.06 1.47 6.38 29.10 0.19 1.65 16 16 C -0.24 -6.03 5.83 24.64 0.14 -5.88 16 17 C 0.04 0.96 11.25 83.66 0.94 1.90 16 18 N -0.50 -13.42 10.54 -203.75 -2.15 -15.57 16 19 C 0.02 0.41 12.23 130.65 1.60 2.01 16 20 S 0.16 3.59 23.22 -56.49 -1.31 2.28 16 21 N -0.41 -16.26 12.16 -60.31 -0.73 -16.99 16 22 O 0.05 2.35 11.31 74.83 0.85 3.20 16 23 H 0.08 4.09 6.08 -2.39 -0.01 4.07 16 24 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 27 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -60.57 285.59 2.38 -58.19 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.17 Total: 5.33 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.79 Total: -7.34 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -6.14 Total: -105.11 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.20 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.31 Total: 2.28 kcal Total: -60.57 2.38 -58.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597135.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.683 kcal (2) G-P(sol) polarization free energy of solvation -60.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds