Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33895 * 125.91277 * 2 1 4 4 N 1.31128 * 115.83773 * 180.02562 * 3 2 1 5 5 C 1.30204 * 117.09437 * 359.97438 * 4 3 2 6 6 C 1.47941 * 125.46430 * 179.97438 * 5 4 3 7 7 N 1.30922 * 126.43622 * 180.02562 * 6 5 4 8 8 O 1.21290 * 110.06778 * 180.02562 * 7 6 5 9 9 C 1.33684 * 110.05978 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.41474 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46971 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47006 * 299.96965 * 10 9 8 13 13 C 1.50704 * 109.46969 * 59.97207 * 10 9 8 14 14 H 1.07994 * 120.00204 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99613 * 179.97438 * 13 10 9 16 16 N 1.31520 * 120.00362 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00043 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47217 * 59.99883 * 17 15 13 19 19 H 1.48497 * 109.47525 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46901 * 300.00062 * 17 15 13 21 21 N 1.30939 * 107.16710 * 359.72557 * 9 8 7 22 22 S 1.76175 * 109.06586 * 0.02562 * 5 4 3 23 23 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46963 * 299.99270 * 1 2 3 25 25 H 1.08997 * 109.47614 * 59.99157 * 1 2 3 26 26 H 1.08002 * 122.08319 * 0.04754 * 3 2 1 27 27 H 1.09001 * 109.46942 * 60.00371 * 12 10 9 28 28 H 1.09001 * 109.47060 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47264 * 300.00270 * 12 10 9 30 30 H 0.97001 * 120.00007 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0844 0.0000 4 7 3.5834 0.8550 -0.0005 5 6 3.9645 -0.3900 -0.0005 6 6 5.3679 -0.8581 -0.0015 7 7 5.7723 -2.1033 -0.0020 8 8 6.9844 -2.1472 -0.0024 9 6 7.4881 -0.9089 -0.0016 10 6 8.9486 -0.5372 -0.0023 11 1 9.0472 0.5483 -0.0019 12 6 9.6214 -1.1109 1.2463 13 6 9.6099 -1.1013 -1.2334 14 1 9.0307 -1.6722 -1.9440 15 6 10.9544 -0.8885 -1.4525 16 7 11.6597 -0.1929 -0.5875 17 14 11.7744 -1.5883 -2.9781 18 1 11.1210 -1.0326 -4.1903 19 1 13.2134 -1.2220 -2.9789 20 1 11.6406 -3.0673 -2.9776 21 7 6.4749 -0.0795 -0.0068 22 16 2.5408 -1.4276 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8877 2.0858 0.0008 27 1 9.5228 -2.1964 1.2459 28 1 10.6778 -0.8424 1.2456 29 1 9.1430 -0.7029 2.1367 30 1 12.6057 -0.0435 -0.7415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596600425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = 105.377669 kcal Electronic energy + Delta-G solvation = -16830.200010 eV Core-core repulsion = 13948.756761 eV Total energy + Delta-G solvation = -2881.443249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.91356 -39.62580 -35.45830 -34.84817 -32.88588 -31.98396 -29.89513 -27.80782 -25.41120 -24.92406 -23.50627 -23.01400 -20.89805 -19.37932 -17.89291 -17.54616 -16.81963 -16.07231 -15.55644 -14.99539 -14.85867 -14.27717 -13.85161 -13.35922 -13.26718 -13.00954 -12.88370 -12.03013 -11.79905 -11.39345 -11.34058 -11.12097 -11.02328 -10.74515 -10.51801 -10.37042 -10.16275 -9.79356 -9.76763 -9.41537 -9.13664 -8.60051 -8.56557 -6.23701 -4.33641 0.19385 1.00424 1.49455 1.80056 2.52366 3.20177 3.25571 3.29627 3.33559 3.39083 3.67611 4.26599 4.50513 4.61067 4.84551 4.96509 5.10823 5.17299 5.41343 5.56107 5.57843 5.95312 6.33268 6.44841 6.59119 6.77486 6.82110 7.34782 7.58768 7.59828 7.77118 7.96797 8.64259 8.71710 9.32830 10.82485 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.004105 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.102290 B = 6820.002907 C = 6877.123994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.217 4.217 3 C 0.033 3.967 4 N -0.425 5.425 5 C 0.147 3.853 6 C 0.218 3.782 7 N -0.385 5.385 8 O 0.088 5.912 9 C 0.250 3.750 10 C 0.125 3.875 11 H 0.079 0.921 12 C -0.140 4.140 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.478 5.478 22 S 0.139 5.861 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.180 0.820 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.018 0.982 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.176 -0.966 2.218 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.339 4.339 3 C -0.120 4.120 4 N -0.141 5.141 5 C -0.129 4.129 6 C -0.055 4.055 7 N -0.096 5.096 8 O 0.026 5.974 9 C 0.032 3.968 10 C 0.104 3.896 11 H 0.097 0.903 12 C -0.198 4.198 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.198 1.198 21 N -0.211 5.211 22 S 0.392 5.608 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.196 0.804 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.037 0.963 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.487 -1.852 2.249 17.728 hybrid contribution 0.282 0.545 -0.842 1.042 sum -17.204 -1.307 1.408 17.311 Atomic orbital electron populations 1.20248 0.86302 1.03327 1.03404 1.26234 1.01792 0.95285 1.10637 1.21611 0.86442 1.00380 1.03539 1.66393 1.16519 1.18153 1.12986 1.23493 0.92629 0.90408 1.06327 1.22253 0.92237 0.86377 1.04613 1.74892 0.93328 1.19733 1.21641 1.85262 1.13194 1.33667 1.65229 1.30353 1.00653 0.77244 0.88551 1.17926 0.75096 0.99352 0.97186 0.90314 1.21874 1.04621 0.99314 0.93999 1.20826 0.94477 1.35739 1.05465 0.91888 1.24869 0.96802 0.94523 0.97002 1.69841 1.08386 1.38572 1.35252 0.86429 0.78172 0.79633 0.82572 1.20004 1.20949 1.19840 1.72256 0.95967 1.30675 1.22220 1.85069 0.97849 1.09636 1.68201 0.91093 0.89996 0.89993 0.80354 0.94048 0.87914 0.96266 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.41 36.01 0.37 -0.11 16 2 C -0.22 -2.39 6.60 -35.83 -0.24 -2.62 16 3 C 0.03 0.43 11.15 -19.38 -0.22 0.21 16 4 N -0.43 -7.42 10.57 -11.34 -0.12 -7.54 16 5 C 0.15 2.67 7.54 -14.27 -0.11 2.56 16 6 C 0.22 4.60 8.12 -156.09 -1.27 3.33 16 7 N -0.39 -8.08 12.21 30.97 0.38 -7.70 16 8 O 0.09 1.93 11.29 18.00 0.20 2.14 16 9 C 0.25 5.77 6.94 -12.98 -0.09 5.68 16 10 C 0.12 3.03 2.77 -92.92 -0.26 2.77 16 11 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 12 C -0.14 -3.12 8.95 37.16 0.33 -2.79 16 13 C -0.53 -13.72 8.55 -34.44 -0.29 -14.01 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.88 -23.35 11.32 55.43 0.63 -22.72 16 17 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 N -0.48 -11.08 11.58 -9.90 -0.11 -11.19 16 22 S 0.14 1.87 23.43 -107.50 -2.52 -0.65 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -28.60 286.62 -6.92 -35.52 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -2.82 Total: -4.16 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.86 Total: -3.24 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.77 Total: -49.15 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.20 Total: 2.14 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.52 Total: -0.65 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.60 -6.92 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.894 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds