Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33895 * 125.91277 * 2 1 4 4 N 1.31128 * 115.83773 * 180.02562 * 3 2 1 5 5 C 1.30204 * 117.09437 * 359.97438 * 4 3 2 6 6 C 1.47941 * 125.46430 * 179.97438 * 5 4 3 7 7 N 1.30922 * 126.43622 * 180.02562 * 6 5 4 8 8 O 1.21290 * 110.06778 * 180.02562 * 7 6 5 9 9 C 1.33684 * 110.05978 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.41474 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46971 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47006 * 299.96965 * 10 9 8 13 13 C 1.50704 * 109.46969 * 59.97207 * 10 9 8 14 14 H 1.07994 * 120.00204 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99613 * 179.97438 * 13 10 9 16 16 N 1.31520 * 120.00362 * 359.97438 * 15 13 10 17 17 Si 1.86796 * 120.00043 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47217 * 59.99883 * 17 15 13 19 19 H 1.48497 * 109.47525 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46901 * 300.00062 * 17 15 13 21 21 N 1.30939 * 107.16710 * 359.72557 * 9 8 7 22 22 S 1.76175 * 109.06586 * 0.02562 * 5 4 3 23 23 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46963 * 299.99270 * 1 2 3 25 25 H 1.08997 * 109.47614 * 59.99157 * 1 2 3 26 26 H 1.08002 * 122.08319 * 0.04754 * 3 2 1 27 27 H 1.09001 * 109.46942 * 60.00371 * 12 10 9 28 28 H 1.09001 * 109.47060 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47264 * 300.00270 * 12 10 9 30 30 H 0.97001 * 120.00007 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2924 1.0844 0.0000 4 7 3.5834 0.8550 -0.0005 5 6 3.9645 -0.3900 -0.0005 6 6 5.3679 -0.8581 -0.0015 7 7 5.7723 -2.1033 -0.0020 8 8 6.9844 -2.1472 -0.0024 9 6 7.4881 -0.9089 -0.0016 10 6 8.9486 -0.5372 -0.0023 11 1 9.0472 0.5483 -0.0019 12 6 9.6214 -1.1109 1.2463 13 6 9.6099 -1.1013 -1.2334 14 1 9.0307 -1.6722 -1.9440 15 6 10.9544 -0.8885 -1.4525 16 7 11.6597 -0.1929 -0.5875 17 14 11.7744 -1.5883 -2.9781 18 1 11.1210 -1.0326 -4.1903 19 1 13.2134 -1.2220 -2.9789 20 1 11.6406 -3.0673 -2.9776 21 7 6.4749 -0.0795 -0.0068 22 16 2.5408 -1.4276 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8877 2.0858 0.0008 27 1 9.5228 -2.1964 1.2459 28 1 10.6778 -0.8424 1.2456 29 1 9.1430 -0.7029 2.1367 30 1 12.6057 -0.0435 -0.7415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = 86.404783 kcal Electronic energy + Delta-G solvation = -16831.022736 eV Core-core repulsion = 13948.756761 eV Total energy + Delta-G solvation = -2882.265976 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.57885 -40.72876 -37.20674 -36.60801 -34.20113 -33.43078 -31.68858 -28.90763 -27.37383 -26.06932 -25.21443 -24.42041 -22.49483 -20.71546 -19.27666 -18.98473 -18.48436 -17.94669 -16.91771 -16.71920 -15.90343 -15.66797 -15.40400 -14.81009 -14.21183 -13.96910 -13.82641 -13.67066 -13.58548 -13.13845 -12.85367 -12.80734 -12.55877 -12.29697 -12.21888 -12.19823 -11.97207 -11.54318 -10.95626 -10.93272 -10.56991 -10.46914 -9.73985 -8.21744 -6.38915 -0.99450 -0.10323 0.18673 0.46306 1.08484 1.47817 1.48153 1.56481 1.84395 1.87382 2.11682 2.40874 2.90918 3.10926 3.69537 3.88323 3.97148 4.13113 4.54375 4.66691 4.75220 4.78219 4.80929 4.89134 4.95474 4.98724 5.19772 5.39939 5.64019 5.82302 6.02661 6.49902 6.62450 7.00890 7.30471 8.84015 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.004105 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.102290 B = 6820.002907 C = 6877.123994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.174 4.174 3 C 0.008 3.992 4 N -0.448 5.448 5 C 0.078 3.922 6 C 0.226 3.774 7 N -0.389 5.389 8 O 0.077 5.923 9 C 0.245 3.755 10 C 0.127 3.873 11 H 0.056 0.944 12 C -0.128 4.128 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.904 5.904 17 Si 0.964 3.036 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.267 1.267 21 N -0.502 5.502 22 S 0.174 5.826 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.211 0.789 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 -1.183 1.895 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.297 4.297 3 C -0.144 4.144 4 N -0.165 5.165 5 C -0.195 4.195 6 C -0.047 4.047 7 N -0.102 5.102 8 O 0.020 5.980 9 C 0.027 3.973 10 C 0.106 3.894 11 H 0.074 0.926 12 C -0.187 4.187 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.169 4.169 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.192 1.192 21 N -0.236 5.236 22 S 0.426 5.574 23 H 0.102 0.898 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.228 0.772 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.050 -2.090 1.936 20.252 hybrid contribution 0.788 0.683 -0.721 1.268 sum -19.263 -1.407 1.215 19.352 Atomic orbital electron populations 1.20568 0.82482 1.04982 1.05589 1.26963 1.03731 0.93472 1.05550 1.22109 0.85120 1.02412 1.04774 1.66331 1.19222 1.18708 1.12229 1.23336 0.92417 0.92028 1.11764 1.22778 0.93437 0.85897 1.02575 1.74835 0.92647 1.19799 1.22886 1.85232 1.13834 1.33134 1.65823 1.30012 1.00282 0.77854 0.89176 1.17737 0.76090 0.97959 0.97590 0.92644 1.21722 1.03459 0.99591 0.93916 1.21019 0.95067 1.36254 1.06185 0.92698 1.25576 0.97117 0.94658 0.99565 1.69933 1.08702 1.38989 1.36474 0.85512 0.77434 0.79130 0.79077 1.20109 1.20056 1.19225 1.72225 0.96902 1.31511 1.22967 1.84883 0.95899 1.09787 1.66829 0.89763 0.87518 0.87620 0.77213 0.93473 0.89468 0.94573 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.41 71.24 0.74 0.13 16 2 C -0.17 -3.22 6.60 24.70 0.16 -3.06 16 3 C 0.01 0.19 11.15 83.81 0.93 1.12 16 4 N -0.45 -15.43 10.57 -189.78 -2.01 -17.43 16 5 C 0.08 2.81 7.54 87.51 0.66 3.47 16 6 C 0.23 9.79 8.12 137.07 1.11 10.90 16 7 N -0.39 -16.68 12.21 -58.96 -0.72 -17.40 16 8 O 0.08 3.50 11.29 74.48 0.84 4.34 16 9 C 0.25 11.74 6.94 88.36 0.61 12.35 16 10 C 0.13 6.37 2.77 -12.29 -0.03 6.34 16 11 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 12 C -0.13 -5.88 8.95 71.98 0.64 -5.23 16 13 C -0.55 -29.24 8.55 25.60 0.22 -29.02 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 15 C 0.03 1.69 5.30 84.65 0.45 2.14 16 16 N -0.90 -48.36 11.32 21.45 0.24 -48.11 16 17 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 N -0.50 -24.14 11.58 -302.42 -3.50 -27.64 16 22 S 0.17 4.36 23.43 -56.49 -1.32 3.03 16 23 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.21 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 4.28 6.07 -2.39 -0.01 4.27 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -63.71 286.62 2.24 -61.48 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: 1.17 Total: -1.00 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.50 Total: -0.85 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.98 Total: -110.59 kcal Atomic # 8 Polarization: 3.50 SS G_CDS: 0.84 Total: 4.34 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.32 Total: 3.03 kcal Total: -63.71 2.24 -61.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.884 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds