Wall clock time and date at job start Mon Mar 30 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33896 * 125.90794 * 2 1 4 4 N 1.31127 * 115.83059 * 179.97438 * 3 2 1 5 5 C 1.30199 * 117.09776 * 0.02562 * 4 3 2 6 6 C 1.47949 * 125.46295 * 179.97438 * 5 4 3 7 7 N 1.30930 * 126.42977 * 179.97438 * 6 5 4 8 8 O 1.21294 * 110.05678 * 179.76400 * 7 6 5 9 9 C 1.33680 * 110.06357 * 0.43016 * 8 7 6 10 10 C 1.50701 * 126.41375 * 179.83636 * 9 8 7 11 11 H 1.09002 * 109.47060 * 179.68772 * 10 9 8 12 12 C 1.52997 * 109.47212 * 59.68717 * 10 9 8 13 13 C 1.50699 * 109.47269 * 299.68625 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.30931 * 107.16630 * 359.57645 * 9 8 7 22 22 S 1.76171 * 109.06559 * 0.24400 * 5 4 3 23 23 H 1.09003 * 109.46741 * 90.00004 * 1 2 3 24 24 H 1.08997 * 109.47443 * 209.99367 * 1 2 3 25 25 H 1.08996 * 109.47377 * 330.00292 * 1 2 3 26 26 H 1.07995 * 122.08626 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99998 * 12 10 9 28 28 H 1.08998 * 109.47533 * 59.99628 * 12 10 9 29 29 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 30 30 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2923 1.0845 0.0000 4 7 3.5834 0.8551 0.0005 5 6 3.9645 -0.3899 0.0005 6 6 5.3680 -0.8579 0.0005 7 7 5.7723 -2.1033 0.0009 8 8 6.9845 -2.1471 -0.0039 9 6 7.4881 -0.9088 0.0014 10 6 8.9486 -0.5371 0.0015 11 1 9.0472 0.5485 0.0010 12 6 9.6210 -1.1109 -1.2472 13 6 9.6104 -1.1010 1.2324 14 1 9.0314 -1.6718 1.9433 15 6 10.9552 -0.8890 1.4505 16 7 11.6603 -0.1943 0.5845 17 14 11.7757 -1.5886 2.9759 18 1 11.6410 -3.0674 2.9763 19 1 13.2148 -1.2222 2.9760 20 1 11.1234 -1.0318 4.1883 21 7 6.4750 -0.0795 0.0008 22 16 2.5408 -1.4275 -0.0074 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 1.8877 2.0858 0.0004 27 1 9.5224 -2.1964 -1.2467 28 1 9.1424 -0.7031 -2.1376 29 1 10.6772 -0.8417 -1.2475 30 1 12.6063 -0.0449 0.7382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596600426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:26 Heat of formation + Delta-G solvation = 105.383855 kcal Electronic energy + Delta-G solvation = -16830.117045 eV Core-core repulsion = 13948.674064 eV Total energy + Delta-G solvation = -2881.442981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.91524 -39.63006 -35.46038 -34.84957 -32.88710 -31.98541 -29.89507 -27.80741 -25.41175 -24.92240 -23.50747 -23.01827 -20.90257 -19.38532 -17.89407 -17.54996 -16.81975 -16.07213 -15.54886 -14.99499 -14.86372 -14.28603 -13.85116 -13.33610 -13.26251 -13.01232 -12.88622 -12.03840 -11.79759 -11.39277 -11.34136 -11.12168 -11.02448 -10.74632 -10.51820 -10.37101 -10.16291 -9.80247 -9.76607 -9.40749 -9.13870 -8.60294 -8.57013 -6.23711 -4.33658 0.19158 1.00033 1.49964 1.79947 2.52384 3.20114 3.25565 3.29613 3.33552 3.38827 3.67354 4.26571 4.50318 4.61031 4.85204 4.95989 5.10789 5.16525 5.41940 5.55901 5.58129 5.95046 6.33149 6.44749 6.59094 6.77324 6.82033 7.34764 7.58544 7.59755 7.77156 7.96813 8.64223 8.71551 9.32824 10.82480 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042610 B = 0.004104 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.969309 B = 6821.496485 C = 6877.835069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.218 4.218 3 C 0.034 3.966 4 N -0.426 5.426 5 C 0.148 3.852 6 C 0.218 3.782 7 N -0.385 5.385 8 O 0.088 5.912 9 C 0.251 3.749 10 C 0.125 3.875 11 H 0.079 0.921 12 C -0.140 4.140 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.478 5.478 22 S 0.138 5.862 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.179 0.821 27 H 0.040 0.960 28 H 0.018 0.982 29 H 0.102 0.898 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.160 -0.975 -2.223 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.340 4.340 3 C -0.119 4.119 4 N -0.141 5.141 5 C -0.128 4.128 6 C -0.055 4.055 7 N -0.096 5.096 8 O 0.026 5.974 9 C 0.032 3.968 10 C 0.104 3.896 11 H 0.097 0.903 12 C -0.198 4.198 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.520 5.520 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.200 1.200 21 N -0.211 5.211 22 S 0.392 5.608 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.196 0.804 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.121 0.879 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.471 -1.859 -2.270 17.716 hybrid contribution 0.281 0.549 0.843 1.045 sum -17.190 -1.309 -1.427 17.299 Atomic orbital electron populations 1.20255 0.86288 1.03635 1.03137 1.26230 1.01807 0.95308 1.10658 1.21642 0.86429 1.00336 1.03460 1.66386 1.16526 1.18161 1.13026 1.23502 0.92636 0.90393 1.06230 1.22254 0.92232 0.86381 1.04623 1.74900 0.93321 1.19724 1.21630 1.85261 1.13201 1.33674 1.65224 1.30347 1.00652 0.77239 0.88541 1.17925 0.75095 0.99352 0.97188 0.90315 1.21874 1.04629 0.99313 0.93992 1.20826 0.94453 1.35762 1.05470 0.91887 1.24869 0.96800 0.94527 0.96995 1.69838 1.08390 1.38606 1.35215 0.86430 0.78175 0.79634 0.82573 1.19835 1.20948 1.20006 1.72248 0.95968 1.30682 1.22228 1.85063 0.97850 1.09611 1.68299 0.90256 0.90918 0.89916 0.80361 0.94044 0.96279 0.87906 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.41 36.01 0.37 -0.12 16 2 C -0.22 -2.39 6.60 -35.83 -0.24 -2.63 16 3 C 0.03 0.44 11.15 -19.38 -0.22 0.22 16 4 N -0.43 -7.43 10.57 -11.34 -0.12 -7.55 16 5 C 0.15 2.68 7.54 -14.27 -0.11 2.58 16 6 C 0.22 4.60 8.12 -156.09 -1.27 3.33 16 7 N -0.39 -8.07 12.21 30.97 0.38 -7.69 16 8 O 0.09 1.93 11.29 18.01 0.20 2.13 16 9 C 0.25 5.77 6.94 -12.98 -0.09 5.68 16 10 C 0.12 3.02 2.77 -92.92 -0.26 2.77 16 11 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 12 C -0.14 -3.12 8.95 37.16 0.33 -2.79 16 13 C -0.53 -13.72 8.55 -34.44 -0.29 -14.01 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 16 N -0.88 -23.34 11.32 55.43 0.63 -22.71 16 17 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 N -0.48 -11.07 11.58 -9.90 -0.11 -11.19 16 22 S 0.14 1.86 23.43 -107.50 -2.52 -0.65 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 286.62 15.07 4.32 4.32 Total: -1.00 -28.58 286.62 -6.92 -35.50 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -2.82 Total: -4.16 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.86 Total: -3.21 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.77 Total: -49.14 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.20 Total: 2.13 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.52 Total: -0.65 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.58 -6.92 -35.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.887 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds