Wall clock time and date at job start Mon Mar 30 2020 06:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33896 * 125.90794 * 2 1 4 4 N 1.31127 * 115.83059 * 179.97438 * 3 2 1 5 5 C 1.30199 * 117.09776 * 0.02562 * 4 3 2 6 6 C 1.47949 * 125.46295 * 179.97438 * 5 4 3 7 7 N 1.30930 * 126.42977 * 179.97438 * 6 5 4 8 8 O 1.21294 * 110.05678 * 179.76400 * 7 6 5 9 9 C 1.33680 * 110.06357 * 0.43016 * 8 7 6 10 10 C 1.50701 * 126.41375 * 179.83636 * 9 8 7 11 11 H 1.09002 * 109.47060 * 179.68772 * 10 9 8 12 12 C 1.52997 * 109.47212 * 59.68717 * 10 9 8 13 13 C 1.50699 * 109.47269 * 299.68625 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.30931 * 107.16630 * 359.57645 * 9 8 7 22 22 S 1.76171 * 109.06559 * 0.24400 * 5 4 3 23 23 H 1.09003 * 109.46741 * 90.00004 * 1 2 3 24 24 H 1.08997 * 109.47443 * 209.99367 * 1 2 3 25 25 H 1.08996 * 109.47377 * 330.00292 * 1 2 3 26 26 H 1.07995 * 122.08626 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99998 * 12 10 9 28 28 H 1.08998 * 109.47533 * 59.99628 * 12 10 9 29 29 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 30 30 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2923 1.0845 0.0000 4 7 3.5834 0.8551 0.0005 5 6 3.9645 -0.3899 0.0005 6 6 5.3680 -0.8579 0.0005 7 7 5.7723 -2.1033 0.0009 8 8 6.9845 -2.1471 -0.0039 9 6 7.4881 -0.9088 0.0014 10 6 8.9486 -0.5371 0.0015 11 1 9.0472 0.5485 0.0010 12 6 9.6210 -1.1109 -1.2472 13 6 9.6104 -1.1010 1.2324 14 1 9.0314 -1.6718 1.9433 15 6 10.9552 -0.8890 1.4505 16 7 11.6603 -0.1943 0.5845 17 14 11.7757 -1.5886 2.9759 18 1 11.6410 -3.0674 2.9763 19 1 13.2148 -1.2222 2.9760 20 1 11.1234 -1.0318 4.1883 21 7 6.4750 -0.0795 0.0008 22 16 2.5408 -1.4275 -0.0074 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 1.8877 2.0858 0.0004 27 1 9.5224 -2.1964 -1.2467 28 1 9.1424 -0.7031 -2.1376 29 1 10.6772 -0.8417 -1.2475 30 1 12.6063 -0.0449 0.7382 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596600426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:25 Heat of formation + Delta-G solvation = 86.429085 kcal Electronic energy + Delta-G solvation = -16830.938986 eV Core-core repulsion = 13948.674064 eV Total energy + Delta-G solvation = -2882.264922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.58018 -40.73300 -37.20821 -36.60919 -34.20253 -33.43145 -31.68821 -28.90758 -27.37398 -26.06732 -25.21500 -24.42352 -22.49855 -20.72194 -19.27518 -18.99047 -18.48365 -17.94685 -16.91572 -16.71564 -15.90759 -15.66889 -15.40911 -14.80897 -14.19727 -13.97858 -13.83279 -13.65314 -13.58546 -13.13468 -12.85487 -12.81045 -12.55996 -12.29707 -12.21750 -12.19576 -11.97240 -11.54385 -10.95682 -10.94017 -10.56984 -10.46066 -9.74966 -8.21700 -6.38877 -0.99721 -0.10683 0.18595 0.46796 1.08498 1.47892 1.48168 1.56533 1.84327 1.87217 2.11361 2.40912 2.90804 3.10973 3.69451 3.87886 3.97056 4.13663 4.54294 4.66640 4.72891 4.78399 4.82472 4.89259 4.95827 4.98638 5.19664 5.39967 5.64011 5.82380 6.02705 6.49642 6.62488 7.00754 7.30522 8.84061 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042610 B = 0.004104 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.969309 B = 6821.496485 C = 6877.835069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.449 5.449 5 C 0.079 3.921 6 C 0.226 3.774 7 N -0.389 5.389 8 O 0.077 5.923 9 C 0.246 3.754 10 C 0.127 3.873 11 H 0.056 0.944 12 C -0.128 4.128 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.904 5.904 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 N -0.502 5.502 22 S 0.173 5.827 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.211 0.789 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.755 -1.198 -1.905 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.298 4.298 3 C -0.143 4.143 4 N -0.165 5.165 5 C -0.194 4.194 6 C -0.047 4.047 7 N -0.101 5.101 8 O 0.020 5.980 9 C 0.027 3.973 10 C 0.106 3.894 11 H 0.074 0.926 12 C -0.187 4.187 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.169 4.169 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.201 1.201 21 N -0.236 5.236 22 S 0.425 5.575 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.228 0.772 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.028 -2.103 -1.961 20.234 hybrid contribution 0.786 0.688 0.721 1.269 sum -19.243 -1.416 -1.240 19.334 Atomic orbital electron populations 1.20577 0.82478 1.05603 1.05039 1.26957 1.03745 0.93499 1.05597 1.22147 0.85107 1.02374 1.04682 1.66325 1.19228 1.18716 1.12271 1.23347 0.92426 0.92013 1.11640 1.22779 0.93431 0.85901 1.02592 1.74843 0.92641 1.19789 1.22868 1.85231 1.13839 1.33138 1.65815 1.30007 1.00282 0.77850 0.89169 1.17735 0.76088 0.97961 0.97590 0.92642 1.21722 1.03469 0.99590 0.93910 1.21019 0.95044 1.36277 1.06190 0.92693 1.25576 0.97116 0.94661 0.99558 1.69930 1.08706 1.39024 1.36437 0.85514 0.77433 0.79134 0.79078 1.19215 1.20060 1.20113 1.72217 0.96901 1.31514 1.22971 1.84876 0.95908 1.09755 1.66921 0.88057 0.89482 0.87352 0.77207 0.93469 0.94591 0.89460 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.41 71.24 0.74 0.12 16 2 C -0.18 -3.24 6.60 24.70 0.16 -3.08 16 3 C 0.01 0.21 11.15 83.81 0.93 1.14 16 4 N -0.45 -15.44 10.57 -189.79 -2.01 -17.45 16 5 C 0.08 2.86 7.54 87.51 0.66 3.52 16 6 C 0.23 9.78 8.12 137.07 1.11 10.89 16 7 N -0.39 -16.66 12.21 -58.96 -0.72 -17.38 16 8 O 0.08 3.49 11.29 74.50 0.84 4.34 16 9 C 0.25 11.74 6.94 88.36 0.61 12.36 16 10 C 0.13 6.37 2.77 -12.29 -0.03 6.34 16 11 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 12 C -0.13 -5.88 8.95 71.98 0.64 -5.23 16 13 C -0.55 -29.23 8.55 25.60 0.22 -29.01 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 15 C 0.03 1.70 5.30 84.65 0.45 2.15 16 16 N -0.90 -48.34 11.32 21.45 0.24 -48.10 16 17 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 N -0.50 -24.12 11.58 -302.44 -3.50 -27.62 16 22 S 0.17 4.34 23.43 -56.49 -1.32 3.02 16 23 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 24 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.21 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 4.28 6.07 -2.39 -0.01 4.27 16 30 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -63.66 286.62 2.24 -61.43 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.17 Total: -0.99 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.50 Total: -0.81 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.98 Total: -110.55 kcal Atomic # 8 Polarization: 3.49 SS G_CDS: 0.84 Total: 4.34 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.32 Total: 3.02 kcal Total: -63.66 2.24 -61.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596600426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.857 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds