Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28735 * 124.73630 * 2 1 4 4 C 1.32579 * 117.13209 * 179.97438 * 3 2 1 5 5 C 1.48233 * 122.97898 * 179.97438 * 4 3 2 6 6 N 1.30867 * 126.42682 * 179.97438 * 5 4 3 7 7 O 1.21290 * 110.07777 * 179.97438 * 6 5 4 8 8 C 1.33663 * 110.04628 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.42609 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.47083 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47266 * 299.97769 * 9 8 7 12 12 C 1.50703 * 109.46802 * 59.97799 * 9 8 7 13 13 H 1.07996 * 120.00040 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99737 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00247 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99682 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47112 * 90.00134 * 16 14 12 18 18 H 1.48500 * 109.47037 * 209.99777 * 16 14 12 19 19 H 1.48497 * 109.47051 * 330.00160 * 16 14 12 20 20 N 1.30970 * 107.15246 * 359.76466 * 8 7 6 21 21 C 1.34920 * 114.03839 * 0.02562 * 4 3 2 22 22 S 1.70911 * 124.74390 * 179.69432 * 2 1 3 23 23 H 1.08999 * 109.47015 * 90.00395 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99548 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00265 * 1 2 3 26 26 H 1.08998 * 109.46799 * 59.99851 * 11 9 8 27 27 H 1.09000 * 109.47047 * 179.97438 * 11 9 8 28 28 H 1.08996 * 109.46988 * 299.99735 * 11 9 8 29 29 H 0.96998 * 119.99827 * 180.02562 * 15 14 12 30 30 H 1.08002 * 126.06300 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2406 1.0579 0.0000 4 6 3.5547 0.8825 0.0005 5 6 4.5191 2.0083 0.0000 6 7 5.8243 1.9134 0.0010 7 8 6.3221 3.0194 -0.0003 8 6 5.3652 3.9526 -0.0017 9 6 5.5712 5.4455 -0.0030 10 1 4.6027 5.9459 -0.0044 11 6 6.3542 5.8534 1.2466 12 6 6.3447 5.8448 -1.2332 13 1 6.6563 5.0927 -1.9428 14 6 6.6545 7.1702 -1.4527 15 7 6.2754 8.0861 -0.5882 16 14 7.6126 7.6652 -2.9779 17 1 6.6658 7.9610 -4.0830 18 1 8.4224 8.8746 -2.6830 19 1 8.5113 6.5536 -3.3803 20 7 4.2150 3.3263 -0.0063 21 6 3.9364 -0.4116 0.0004 22 16 2.4811 -1.4044 0.0075 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 7.3225 5.3530 1.2479 27 1 6.5035 6.9331 1.2454 28 1 5.7947 5.5647 2.1363 29 1 6.4930 9.0186 -0.7429 30 1 4.9537 -0.7744 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596601720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = 104.443292 kcal Electronic energy + Delta-G solvation = -16946.484650 eV Core-core repulsion = 14065.000883 eV Total energy + Delta-G solvation = -2881.483767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.78530 -39.84668 -35.31047 -34.73067 -32.72085 -31.60919 -29.78827 -28.23873 -25.40305 -25.33718 -23.44865 -22.56374 -20.72744 -19.50781 -18.21404 -17.40985 -16.53434 -15.98362 -15.51317 -15.10394 -14.91363 -14.32809 -13.74601 -13.50364 -12.96813 -12.94322 -12.39880 -12.00656 -11.88067 -11.71064 -11.29623 -11.05322 -11.02375 -10.69045 -10.42626 -10.32817 -10.10573 -9.74973 -9.70149 -9.58803 -9.10091 -8.58739 -8.55171 -6.21802 -4.31234 0.43042 1.12480 1.46671 1.70873 2.46826 3.24522 3.31000 3.34767 3.41014 3.50784 3.77500 4.25223 4.36311 4.63937 5.04341 5.11935 5.13297 5.24630 5.37510 5.59514 5.71926 5.88985 6.43862 6.54805 6.63877 6.82191 6.85890 7.38069 7.60073 7.62243 7.80059 7.99814 8.67615 8.85018 9.34997 10.84469 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.004167 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.064023 B = 6718.177078 C = 6810.421552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.439 5.439 4 C 0.160 3.840 5 C 0.219 3.781 6 N -0.393 5.393 7 O 0.080 5.920 8 C 0.245 3.755 9 C 0.125 3.875 10 H 0.077 0.923 11 C -0.139 4.139 12 C -0.524 4.524 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.884 5.884 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 N -0.486 5.486 21 C -0.226 4.226 22 S 0.130 5.870 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.017 0.983 29 H 0.267 0.733 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -15.676 2.225 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.154 5.154 4 C 0.028 3.972 5 C -0.054 4.054 6 N -0.103 5.103 7 O 0.021 5.979 8 C 0.027 3.973 9 C 0.104 3.896 10 H 0.095 0.905 11 C -0.197 4.197 12 C -0.563 4.563 13 H 0.081 0.919 14 C -0.132 4.132 15 N -0.521 5.521 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 N -0.218 5.218 21 C -0.368 4.368 22 S 0.384 5.616 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.167 -16.809 2.269 18.825 hybrid contribution 1.240 1.137 -0.859 1.889 sum -6.927 -15.672 1.410 17.192 Atomic orbital electron populations 1.20480 0.84643 1.04410 1.04164 1.27033 1.02059 0.90354 1.03444 1.66022 1.03537 1.31169 1.14646 1.16852 0.87633 0.88596 1.04159 1.22666 0.88466 0.90680 1.03546 1.74808 1.09710 1.03499 1.22304 1.85248 1.36743 1.10310 1.65594 1.30278 0.79886 0.98270 0.88864 1.17885 1.00034 0.74546 0.97099 0.90488 1.21860 0.98196 1.05629 0.94040 1.20869 1.36504 0.93383 1.05517 0.91916 1.24871 0.95420 0.95979 0.96971 1.69852 1.45538 1.01528 1.35178 0.86382 0.79849 0.78221 0.82428 1.20397 1.20854 1.19604 1.72227 1.25744 1.01493 1.22367 1.27065 1.03901 0.95151 1.10698 1.83814 0.96710 1.12528 1.68548 0.89335 0.89972 0.88875 0.94115 0.87979 0.96349 0.92308 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.01 0.38 -0.25 16 2 C 0.05 0.64 7.36 -13.57 -0.10 0.54 16 3 N -0.44 -7.61 10.55 -8.44 -0.09 -7.70 16 4 C 0.16 2.90 6.72 -84.61 -0.57 2.33 16 5 C 0.22 4.71 8.01 -156.07 -1.25 3.46 16 6 N -0.39 -8.40 12.09 30.99 0.37 -8.02 16 7 O 0.08 1.82 11.29 18.05 0.20 2.03 16 8 C 0.25 5.81 6.94 -12.98 -0.09 5.72 16 9 C 0.12 3.09 2.77 -92.92 -0.26 2.83 16 10 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 11 C -0.14 -3.17 8.95 37.16 0.33 -2.84 16 12 C -0.52 -13.89 8.55 -34.44 -0.29 -14.18 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 15 N -0.88 -23.61 11.32 55.43 0.63 -22.98 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 N -0.49 -11.52 11.58 -9.86 -0.11 -11.64 16 21 C -0.23 -3.19 11.11 29.55 0.33 -2.86 16 22 S 0.13 1.36 23.16 -107.50 -2.49 -1.13 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -29.68 286.04 -6.63 -36.31 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -2.82 Total: -3.12 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.62 Total: -3.49 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.80 Total: -50.34 kcal Atomic # 8 Polarization: 1.82 SS G_CDS: 0.20 Total: 2.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.68 -6.63 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596601720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.753 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds