Wall clock time and date at job start Mon Mar 30 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28735 * 124.73630 * 2 1 4 4 C 1.32579 * 117.13209 * 179.97438 * 3 2 1 5 5 C 1.48233 * 122.97868 * 180.02562 * 4 3 2 6 6 N 1.30866 * 126.42421 * 179.66389 * 5 4 3 7 7 O 1.21298 * 110.07383 * 179.80493 * 6 5 4 8 8 C 1.33664 * 110.04643 * 0.46826 * 7 6 5 9 9 C 1.50704 * 126.42638 * 179.73168 * 8 7 6 10 10 H 1.08998 * 109.47361 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47195 * 59.97408 * 9 8 7 12 12 C 1.50700 * 109.46751 * 299.97233 * 9 8 7 13 13 H 1.08000 * 120.00228 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99818 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00021 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00141 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46945 * 90.00452 * 16 14 12 18 18 H 1.48502 * 109.47154 * 210.00319 * 16 14 12 19 19 H 1.48496 * 109.46966 * 330.00253 * 16 14 12 20 20 N 1.30960 * 107.15215 * 359.70751 * 8 7 6 21 21 C 1.34920 * 114.03839 * 0.02562 * 4 3 2 22 22 S 1.70911 * 124.74390 * 179.69432 * 2 1 3 23 23 H 1.08999 * 109.47015 * 90.00395 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99548 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00265 * 1 2 3 26 26 H 1.09000 * 109.47191 * 180.02562 * 11 9 8 27 27 H 1.08998 * 109.46881 * 300.00186 * 11 9 8 28 28 H 1.09000 * 109.46886 * 60.00082 * 11 9 8 29 29 H 0.96999 * 120.00303 * 179.97438 * 15 14 12 30 30 H 1.08002 * 126.06289 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2406 1.0579 0.0000 4 6 3.5547 0.8825 0.0005 5 6 4.5191 2.0083 0.0012 6 7 5.8243 1.9134 0.0079 7 8 6.3221 3.0194 0.0024 8 6 5.3652 3.9526 0.0017 9 6 5.5711 5.4456 0.0013 10 1 4.6028 5.9459 0.0002 11 6 6.3564 5.8518 -1.2474 12 6 6.3424 5.8465 1.2324 13 1 6.6528 5.0954 1.9436 14 6 6.6527 7.1721 1.4501 15 7 6.2752 8.0867 0.5837 16 14 7.6093 7.6691 2.9757 17 1 9.0644 7.6345 2.6806 18 1 7.2186 9.0439 3.3790 19 1 7.3055 6.7241 4.0801 20 7 4.2150 3.3264 0.0008 21 6 3.9364 -0.4116 0.0004 22 16 2.4811 -1.4044 0.0075 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 6.5058 6.9315 -1.2474 27 1 7.3248 5.3514 -1.2463 28 1 5.7985 5.5617 -2.1377 29 1 6.4931 9.0194 0.7371 30 1 4.9537 -0.7744 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596601722.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:09 Heat of formation + Delta-G solvation = 104.436785 kcal Electronic energy + Delta-G solvation = -16946.559796 eV Core-core repulsion = 14065.075747 eV Total energy + Delta-G solvation = -2881.484049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.78433 -39.84653 -35.31062 -34.73102 -32.72123 -31.60947 -29.78797 -28.23859 -25.40303 -25.33735 -23.44835 -22.56388 -20.72745 -19.50780 -18.21581 -17.40777 -16.53536 -15.98238 -15.51311 -15.10325 -14.91475 -14.32769 -13.74846 -13.50311 -12.97218 -12.93978 -12.39748 -12.00809 -11.88446 -11.70880 -11.29400 -11.07121 -11.00085 -10.68167 -10.44049 -10.32804 -10.11003 -9.74809 -9.69866 -9.58813 -9.10174 -8.59001 -8.54919 -6.21786 -4.31237 0.43039 1.12502 1.46687 1.70852 2.46877 3.24471 3.30945 3.34780 3.40962 3.50848 3.77463 4.25233 4.36303 4.63928 5.04452 5.11914 5.13331 5.24377 5.37508 5.59642 5.71981 5.88998 6.43854 6.54823 6.63911 6.82063 6.85856 7.38102 7.60088 7.62195 7.80090 7.99824 8.67606 8.84980 9.34986 10.84472 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.004167 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.512364 B = 6717.874174 C = 6809.381508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.439 5.439 4 C 0.160 3.840 5 C 0.219 3.781 6 N -0.392 5.392 7 O 0.080 5.920 8 C 0.246 3.754 9 C 0.125 3.875 10 H 0.078 0.922 11 C -0.139 4.139 12 C -0.524 4.524 13 H 0.063 0.937 14 C 0.071 3.929 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.486 5.486 21 C -0.226 4.226 22 S 0.130 5.870 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.040 0.960 28 H 0.017 0.983 29 H 0.267 0.733 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 -15.675 -2.211 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.154 5.154 4 C 0.028 3.972 5 C -0.053 4.053 6 N -0.103 5.103 7 O 0.021 5.979 8 C 0.027 3.973 9 C 0.104 3.896 10 H 0.095 0.905 11 C -0.197 4.197 12 C -0.563 4.563 13 H 0.081 0.919 14 C -0.132 4.132 15 N -0.521 5.521 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.197 1.197 20 N -0.218 5.218 21 C -0.368 4.368 22 S 0.384 5.616 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.172 -16.806 -2.229 18.820 hybrid contribution 1.257 1.133 0.814 1.878 sum -6.915 -15.672 -1.414 17.188 Atomic orbital electron populations 1.20480 0.84644 1.04447 1.04128 1.27032 1.02058 0.90353 1.03449 1.66021 1.03538 1.31174 1.14639 1.16852 0.87633 0.88597 1.04162 1.22667 0.88468 0.90678 1.03536 1.74809 1.09712 1.03494 1.22303 1.85249 1.36750 1.10314 1.65606 1.30274 0.79888 0.98267 0.88852 1.17885 1.00035 0.74545 0.97095 0.90479 1.21864 0.98188 1.05636 0.94048 1.20869 1.36573 0.93394 1.05434 0.91915 1.24871 0.95405 0.95978 0.96991 1.69850 1.45429 1.01583 1.35238 0.86377 0.80043 0.77904 0.82517 1.20251 1.20904 1.19736 1.72223 1.25746 1.01493 1.22377 1.27066 1.03902 0.95151 1.10694 1.83815 0.96710 1.12527 1.68548 0.89355 0.89966 0.88861 0.87973 0.94123 0.96351 0.92306 0.79707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 36.01 0.38 -0.25 16 2 C 0.05 0.64 7.36 -13.57 -0.10 0.54 16 3 N -0.44 -7.61 10.55 -8.44 -0.09 -7.70 16 4 C 0.16 2.90 6.72 -84.61 -0.57 2.33 16 5 C 0.22 4.72 8.01 -156.06 -1.25 3.47 16 6 N -0.39 -8.39 12.09 30.99 0.37 -8.02 16 7 O 0.08 1.81 11.29 18.05 0.20 2.02 16 8 C 0.25 5.81 6.94 -12.98 -0.09 5.72 16 9 C 0.12 3.09 2.77 -92.92 -0.26 2.83 16 10 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 11 C -0.14 -3.18 8.95 37.16 0.33 -2.84 16 12 C -0.52 -13.89 8.55 -34.44 -0.29 -14.18 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 15 N -0.88 -23.61 11.32 55.43 0.63 -22.98 16 16 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 N -0.49 -11.53 11.58 -9.86 -0.11 -11.64 16 21 C -0.23 -3.19 11.11 29.55 0.33 -2.86 16 22 S 0.13 1.36 23.16 -107.50 -2.49 -1.13 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 30 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -29.68 286.04 -6.63 -36.31 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.82 Total: -3.13 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -1.62 Total: -3.49 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.80 Total: -50.34 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.20 Total: 2.02 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.13 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.68 -6.63 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596601722.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.750 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds