Wall clock time and date at job start Mon Mar 30 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28735 * 124.73630 * 2 1 4 4 C 1.32579 * 117.13209 * 179.97438 * 3 2 1 5 5 C 1.48233 * 122.97868 * 180.02562 * 4 3 2 6 6 N 1.30866 * 126.42421 * 179.66389 * 5 4 3 7 7 O 1.21298 * 110.07383 * 179.80493 * 6 5 4 8 8 C 1.33664 * 110.04643 * 0.46826 * 7 6 5 9 9 C 1.50704 * 126.42638 * 179.73168 * 8 7 6 10 10 H 1.08998 * 109.47361 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47195 * 59.97408 * 9 8 7 12 12 C 1.50700 * 109.46751 * 299.97233 * 9 8 7 13 13 H 1.08000 * 120.00228 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99818 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00021 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00141 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46945 * 90.00452 * 16 14 12 18 18 H 1.48502 * 109.47154 * 210.00319 * 16 14 12 19 19 H 1.48496 * 109.46966 * 330.00253 * 16 14 12 20 20 N 1.30960 * 107.15215 * 359.70751 * 8 7 6 21 21 C 1.34920 * 114.03839 * 0.02562 * 4 3 2 22 22 S 1.70911 * 124.74390 * 179.69432 * 2 1 3 23 23 H 1.08999 * 109.47015 * 90.00395 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99548 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00265 * 1 2 3 26 26 H 1.09000 * 109.47191 * 180.02562 * 11 9 8 27 27 H 1.08998 * 109.46881 * 300.00186 * 11 9 8 28 28 H 1.09000 * 109.46886 * 60.00082 * 11 9 8 29 29 H 0.96999 * 120.00303 * 179.97438 * 15 14 12 30 30 H 1.08002 * 126.06289 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2406 1.0579 0.0000 4 6 3.5547 0.8825 0.0005 5 6 4.5191 2.0083 0.0012 6 7 5.8243 1.9134 0.0079 7 8 6.3221 3.0194 0.0024 8 6 5.3652 3.9526 0.0017 9 6 5.5711 5.4456 0.0013 10 1 4.6028 5.9459 0.0002 11 6 6.3564 5.8518 -1.2474 12 6 6.3424 5.8465 1.2324 13 1 6.6528 5.0954 1.9436 14 6 6.6527 7.1721 1.4501 15 7 6.2752 8.0867 0.5837 16 14 7.6093 7.6691 2.9757 17 1 9.0644 7.6345 2.6806 18 1 7.2186 9.0439 3.3790 19 1 7.3055 6.7241 4.0801 20 7 4.2150 3.3264 0.0008 21 6 3.9364 -0.4116 0.0004 22 16 2.4811 -1.4044 0.0075 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 6.5058 6.9315 -1.2474 27 1 7.3248 5.3514 -1.2463 28 1 5.7985 5.5617 -2.1377 29 1 6.4931 9.0194 0.7371 30 1 4.9537 -0.7744 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596601722.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:09 Heat of formation + Delta-G solvation = 84.151419 kcal Electronic energy + Delta-G solvation = -16947.439435 eV Core-core repulsion = 14065.075747 eV Total energy + Delta-G solvation = -2882.363689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.49490 -40.95669 -37.13829 -36.48920 -34.21543 -33.04316 -31.50803 -29.29137 -27.38416 -26.66824 -25.23098 -24.05874 -22.17079 -20.81736 -19.59148 -19.10499 -18.26101 -17.76085 -16.94983 -16.60412 -16.13938 -15.62549 -15.42131 -14.81387 -14.35222 -13.81397 -13.79499 -13.57980 -13.12453 -13.06389 -12.98551 -12.84180 -12.71878 -12.50751 -12.29986 -12.16669 -11.95325 -11.50538 -10.91770 -10.76502 -10.58738 -10.57666 -9.74937 -8.22492 -6.39573 -0.66850 0.13091 0.17012 0.45220 0.91800 1.45644 1.46615 1.56728 1.91478 1.97013 2.28825 2.40251 2.86833 3.09538 3.44676 4.03689 4.08637 4.14885 4.44610 4.61880 4.68326 4.68556 4.80744 4.82116 4.95118 4.99010 5.15303 5.39143 5.63135 5.81590 6.02029 6.56245 6.61868 7.10269 7.29733 8.83529 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.004167 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.512364 B = 6717.874174 C = 6809.381508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.492 5.492 4 C 0.113 3.887 5 C 0.224 3.776 6 N -0.394 5.394 7 O 0.069 5.931 8 C 0.240 3.760 9 C 0.127 3.873 10 H 0.053 0.947 11 C -0.127 4.127 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.032 3.968 15 N -0.904 5.904 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.276 1.276 20 N -0.509 5.509 21 C -0.228 4.228 22 S 0.244 5.756 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.272 0.728 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -17.933 -1.894 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.239 4.239 3 N -0.208 5.208 4 C -0.019 4.019 5 C -0.049 4.049 6 N -0.107 5.107 7 O 0.013 5.987 8 C 0.021 3.979 9 C 0.106 3.894 10 H 0.071 0.929 11 C -0.186 4.186 12 C -0.584 4.584 13 H 0.071 0.929 14 C -0.169 4.169 15 N -0.541 5.541 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.200 1.200 20 N -0.242 5.242 21 C -0.371 4.371 22 S 0.499 5.501 23 H 0.124 0.876 24 H 0.134 0.866 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.869 -19.070 -1.922 21.119 hybrid contribution 1.333 1.628 0.694 2.216 sum -7.536 -17.442 -1.228 19.040 Atomic orbital electron populations 1.20728 0.81834 1.05708 1.05604 1.27775 1.03867 0.90816 1.01482 1.65989 1.03552 1.34017 1.17241 1.16857 0.87973 0.88699 1.08389 1.23335 0.89099 0.90929 1.01551 1.74756 1.09836 1.02687 1.23394 1.85218 1.36722 1.10557 1.66182 1.29971 0.80382 0.98050 0.89521 1.17701 0.98813 0.75304 0.97550 0.92874 1.21708 0.98415 1.04512 0.93926 1.21029 1.37470 0.93751 1.06120 0.92907 1.25582 0.96013 0.95737 0.99604 1.69937 1.45777 1.01932 1.36456 0.85443 0.79065 0.77548 0.78966 1.19287 1.20118 1.20045 1.72206 1.25980 1.03001 1.23058 1.27435 1.06611 0.94967 1.08119 1.83412 0.92456 1.08700 1.65514 0.87627 0.86581 0.89721 0.89465 0.93586 0.94714 0.91895 0.78642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.46 71.24 0.75 -0.31 16 2 C 0.04 0.91 7.36 88.56 0.65 1.56 16 3 N -0.49 -16.86 10.55 -180.61 -1.91 -18.77 16 4 C 0.11 4.09 6.72 40.93 0.27 4.36 16 5 C 0.22 9.84 8.01 137.19 1.10 10.94 16 6 N -0.39 -17.16 12.09 -58.95 -0.71 -17.87 16 7 O 0.07 3.19 11.29 74.65 0.84 4.04 16 8 C 0.24 11.74 6.94 88.36 0.61 12.36 16 9 C 0.13 6.51 2.77 -12.29 -0.03 6.48 16 10 H 0.05 2.95 8.14 -2.39 -0.02 2.93 16 11 C -0.13 -5.94 8.95 71.98 0.64 -5.30 16 12 C -0.55 -29.63 8.55 25.60 0.22 -29.41 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.03 1.70 5.30 84.65 0.45 2.15 16 15 N -0.90 -48.77 11.32 21.45 0.24 -48.53 16 16 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 N -0.51 -25.03 11.58 -302.36 -3.50 -28.53 16 21 C -0.23 -6.04 11.11 67.06 0.75 -5.30 16 22 S 0.24 4.18 23.16 -56.49 -1.31 2.87 16 23 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 4.35 6.07 -2.39 -0.01 4.34 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -66.01 286.04 2.26 -63.75 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.17 Total: 1.49 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.41 Total: -2.48 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.88 Total: -113.70 kcal Atomic # 8 Polarization: 3.19 SS G_CDS: 0.84 Total: 4.04 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.31 Total: 2.87 kcal Total: -66.01 2.26 -63.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596601722.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.900 kcal (2) G-P(sol) polarization free energy of solvation -66.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds