Wall clock time and date at job start Mon Mar 30 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75503 * 124.71282 * 2 1 4 4 C 1.70444 * 92.44730 * 179.97438 * 3 2 1 5 5 C 1.36012 * 110.81661 * 0.02562 * 4 3 2 6 6 C 1.47188 * 123.46172 * 179.97438 * 5 4 3 7 7 O 1.21643 * 119.99770 * 186.47919 * 6 5 4 8 8 N 1.34774 * 120.00008 * 6.20419 * 6 5 4 9 9 C 1.47067 * 136.05884 * 355.93776 * 8 6 5 10 10 C 1.53750 * 87.88893 * 152.96189 * 9 8 6 11 11 C 1.50700 * 114.09030 * 139.78074 * 10 9 8 12 12 H 1.07999 * 119.99765 * 266.55981 * 11 10 9 13 13 C 1.37875 * 120.00132 * 86.55461 * 11 10 9 14 14 N 1.31514 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00142 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46947 * 60.00193 * 15 13 11 17 17 H 1.48497 * 109.47174 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47183 * 300.00187 * 15 13 11 19 19 C 1.47069 * 136.05582 * 176.30393 * 8 6 5 20 20 C 1.32768 * 124.71155 * 180.27591 * 2 1 3 21 21 C 1.50700 * 123.45900 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.46844 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46873 * 120.01771 * 1 2 3 24 24 H 1.08994 * 109.47149 * 240.02289 * 1 2 3 25 25 H 1.07995 * 124.59376 * 180.02562 * 4 3 2 26 26 H 1.09000 * 113.46534 * 267.69445 * 9 8 6 27 27 H 1.08998 * 113.46534 * 38.12650 * 9 8 6 28 28 H 1.09001 * 114.57190 * 272.66147 * 10 9 8 29 29 H 0.97003 * 120.00058 * 180.02562 * 14 13 11 30 30 H 1.08995 * 113.46612 * 321.86168 * 19 8 6 31 31 H 1.08992 * 113.46731 * 92.30380 * 19 8 6 32 32 H 1.08993 * 109.47096 * 270.21120 * 21 20 2 33 33 H 1.09003 * 109.47327 * 30.21297 * 21 20 2 34 34 H 1.09002 * 109.46986 * 150.21220 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9477 0.5328 0.0008 5 6 3.6778 -0.8003 0.0004 6 6 4.7201 -1.8394 0.0004 7 8 4.4119 -3.0101 -0.1188 8 7 6.0166 -1.4935 0.1268 9 6 6.7736 -0.2353 0.2095 10 6 7.8443 -0.9981 1.0068 11 6 9.2599 -0.6258 0.6483 12 1 9.7967 -1.1966 -0.0949 13 6 9.8696 0.4437 1.2690 14 7 9.2161 1.1386 2.1743 15 14 11.6241 0.9058 0.8242 16 1 11.6965 1.2407 -0.6208 17 1 12.0450 2.0819 1.6271 18 1 12.5256 -0.2384 1.1129 19 6 7.2974 -2.2079 0.2364 20 6 2.2631 -1.0914 -0.0053 21 6 1.7027 -2.4903 -0.0126 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5134 0.8901 25 1 4.9408 0.9572 0.0014 26 1 7.1261 0.1235 -0.7576 27 1 6.2683 0.5381 0.7879 28 1 7.6678 -1.0359 2.0817 29 1 9.6449 1.8913 2.6108 30 1 7.2384 -3.1150 0.8378 31 1 7.7879 -2.3692 -0.7235 32 1 1.5637 -2.8314 1.0133 33 1 0.7434 -2.4948 -0.5301 34 1 2.3958 -3.1566 -0.5262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:32 Heat of formation + Delta-G solvation = 25.251523 kcal Electronic energy + Delta-G solvation = -17522.448018 eV Core-core repulsion = 14741.070582 eV Total energy + Delta-G solvation = -2781.377436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78912 -37.94845 -36.51375 -32.86126 -32.32373 -29.53263 -28.91039 -25.92474 -25.40529 -24.59682 -23.41365 -20.36825 -18.73858 -18.24782 -17.01436 -16.85002 -15.92075 -15.17364 -14.80375 -14.59271 -14.26755 -14.01319 -13.31337 -12.98300 -12.70012 -12.57222 -12.40963 -12.14975 -11.93912 -11.74468 -11.57267 -11.56995 -11.30380 -10.96821 -10.83002 -10.68859 -10.34876 -9.61058 -9.23455 -8.98039 -8.61036 -8.51219 -8.23532 -7.84421 -6.22171 -4.28173 0.98541 1.66994 2.06254 2.19286 3.23004 3.28701 3.30519 3.55727 3.80395 4.30341 4.78467 5.02592 5.10439 5.14435 5.31542 5.43187 5.50122 5.67722 5.80033 5.90743 5.94803 5.97724 6.10552 6.15027 6.29235 6.35576 6.41542 6.46320 6.60826 6.71100 6.82739 7.50795 7.75369 8.13203 8.47634 8.75505 8.77066 9.38929 10.87466 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.004869 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.304472 B = 5748.788875 C = 6488.851825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.219 4.219 3 S 0.161 5.839 4 C -0.210 4.210 5 C -0.140 4.140 6 C 0.593 3.407 7 O -0.559 6.559 8 N -0.637 5.637 9 C 0.090 3.910 10 C 0.037 3.963 11 C -0.519 4.519 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.102 3.898 20 C -0.056 4.056 21 C -0.098 4.098 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.183 0.817 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.265 0.735 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.814 1.267 -3.763 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.336 4.336 3 S 0.428 5.572 4 C -0.348 4.348 5 C -0.157 4.157 6 C 0.382 3.618 7 O -0.440 6.440 8 N -0.369 5.369 9 C -0.032 4.032 10 C 0.017 3.983 11 C -0.557 4.557 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.020 4.020 20 C -0.068 4.068 21 C -0.157 4.157 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.200 0.800 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.476 2.341 -3.714 15.127 hybrid contribution 1.440 -0.919 -0.212 1.722 sum -13.035 1.423 -3.926 13.688 Atomic orbital electron populations 1.20231 0.87798 1.02395 1.02711 1.24075 1.00041 0.95688 1.13753 1.82824 0.94349 1.08818 1.71202 1.26250 1.05044 0.97748 1.05752 1.20158 0.93606 0.92687 1.09287 1.17113 0.80603 0.87335 0.76718 1.90656 1.81358 1.19297 1.52726 1.49850 1.03830 1.13610 1.69648 1.23844 0.91316 0.87341 1.00688 1.20396 0.93420 0.88704 0.95750 1.20878 0.97161 1.14346 1.23324 0.91802 1.25025 0.98066 0.96060 0.94290 1.69941 1.37459 1.19323 1.25532 0.86585 0.84388 0.78065 0.78593 1.20042 1.21195 1.19994 1.23353 0.79892 0.98450 1.00279 1.19716 0.90392 0.96530 1.00121 1.20634 1.00562 0.91947 1.02549 0.91691 0.90856 0.90851 0.80008 0.90484 0.91860 0.91193 0.92521 0.92259 0.90762 0.91384 0.92251 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 9.47 36.01 0.34 -0.35 16 2 C -0.22 -2.90 6.44 -36.18 -0.23 -3.14 16 3 S 0.16 2.09 22.99 -107.50 -2.47 -0.38 16 4 C -0.21 -3.42 10.04 29.93 0.30 -3.12 16 5 C -0.14 -2.54 5.98 -104.63 -0.63 -3.17 16 6 C 0.59 12.45 8.02 -12.63 -0.10 12.35 16 7 O -0.56 -12.68 14.97 5.24 0.08 -12.60 16 8 N -0.64 -13.40 3.68 -186.43 -0.69 -14.08 16 9 C 0.09 1.90 6.45 -8.37 -0.05 1.84 16 10 C 0.04 0.85 3.80 -91.12 -0.35 0.51 16 11 C -0.52 -13.06 8.82 -34.44 -0.30 -13.36 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -23.81 13.26 55.43 0.74 -23.07 16 15 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.10 2.15 8.18 -8.50 -0.07 2.08 16 20 C -0.06 -0.89 6.01 -104.06 -0.62 -1.51 16 21 C -0.10 -1.40 9.35 36.01 0.34 -1.07 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.18 3.00 4.60 -52.49 -0.24 2.76 16 26 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 27 H 0.06 1.30 6.07 -51.93 -0.32 0.99 16 28 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.67 7.38 -51.93 -0.38 0.29 16 34 H 0.09 1.57 5.90 -51.93 -0.31 1.26 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -28.42 298.65 -8.50 -36.92 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.16 Total: 1.16 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.48 Total: -7.25 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.05 Total: -37.16 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.38 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.42 -8.50 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.170 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds