Wall clock time and date at job start Mon Mar 30 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75503 * 124.71282 * 2 1 4 4 C 1.70444 * 92.44730 * 179.97438 * 3 2 1 5 5 C 1.36012 * 110.81661 * 0.02562 * 4 3 2 6 6 C 1.47188 * 123.46172 * 179.97438 * 5 4 3 7 7 O 1.21643 * 119.99770 * 186.47919 * 6 5 4 8 8 N 1.34774 * 120.00008 * 6.20419 * 6 5 4 9 9 C 1.47067 * 136.05884 * 355.93776 * 8 6 5 10 10 C 1.53750 * 87.88893 * 152.96189 * 9 8 6 11 11 C 1.50700 * 114.09030 * 139.78074 * 10 9 8 12 12 H 1.07999 * 119.99765 * 266.55981 * 11 10 9 13 13 C 1.37875 * 120.00132 * 86.55461 * 11 10 9 14 14 N 1.31514 * 119.99900 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00142 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46947 * 60.00193 * 15 13 11 17 17 H 1.48497 * 109.47174 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47183 * 300.00187 * 15 13 11 19 19 C 1.47069 * 136.05582 * 176.30393 * 8 6 5 20 20 C 1.32768 * 124.71155 * 180.27591 * 2 1 3 21 21 C 1.50700 * 123.45900 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.46844 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46873 * 120.01771 * 1 2 3 24 24 H 1.08994 * 109.47149 * 240.02289 * 1 2 3 25 25 H 1.07995 * 124.59376 * 180.02562 * 4 3 2 26 26 H 1.09000 * 113.46534 * 267.69445 * 9 8 6 27 27 H 1.08998 * 113.46534 * 38.12650 * 9 8 6 28 28 H 1.09001 * 114.57190 * 272.66147 * 10 9 8 29 29 H 0.97003 * 120.00058 * 180.02562 * 14 13 11 30 30 H 1.08995 * 113.46612 * 321.86168 * 19 8 6 31 31 H 1.08992 * 113.46731 * 92.30380 * 19 8 6 32 32 H 1.08993 * 109.47096 * 270.21120 * 21 20 2 33 33 H 1.09003 * 109.47327 * 30.21297 * 21 20 2 34 34 H 1.09002 * 109.46986 * 150.21220 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5065 1.4427 0.0000 4 6 3.9477 0.5328 0.0008 5 6 3.6778 -0.8003 0.0004 6 6 4.7201 -1.8394 0.0004 7 8 4.4119 -3.0101 -0.1188 8 7 6.0166 -1.4935 0.1268 9 6 6.7736 -0.2353 0.2095 10 6 7.8443 -0.9981 1.0068 11 6 9.2599 -0.6258 0.6483 12 1 9.7967 -1.1966 -0.0949 13 6 9.8696 0.4437 1.2690 14 7 9.2161 1.1386 2.1743 15 14 11.6241 0.9058 0.8242 16 1 11.6965 1.2407 -0.6208 17 1 12.0450 2.0819 1.6271 18 1 12.5256 -0.2384 1.1129 19 6 7.2974 -2.2079 0.2364 20 6 2.2631 -1.0914 -0.0053 21 6 1.7027 -2.4903 -0.0126 22 1 -0.3633 1.0276 -0.0005 23 1 -0.3633 -0.5141 -0.8898 24 1 -0.3633 -0.5134 0.8901 25 1 4.9408 0.9572 0.0014 26 1 7.1261 0.1235 -0.7576 27 1 6.2683 0.5381 0.7879 28 1 7.6678 -1.0359 2.0817 29 1 9.6449 1.8913 2.6108 30 1 7.2384 -3.1150 0.8378 31 1 7.7879 -2.3692 -0.7235 32 1 1.5637 -2.8314 1.0133 33 1 0.7434 -2.4948 -0.5301 34 1 2.3958 -3.1566 -0.5262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:31 Heat of formation + Delta-G solvation = 9.513565 kcal Electronic energy + Delta-G solvation = -17523.130467 eV Core-core repulsion = 14741.070582 eV Total energy + Delta-G solvation = -2782.059886 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39026 -39.39322 -38.02365 -34.71654 -33.56747 -30.93564 -30.22765 -27.48673 -27.08899 -25.93101 -24.88489 -22.04016 -20.18297 -19.56544 -18.73661 -18.28569 -17.47673 -16.74657 -16.49322 -16.22995 -15.56206 -15.18543 -14.76433 -14.26151 -14.22608 -13.78886 -13.61229 -13.52197 -13.32627 -13.20010 -13.02081 -12.81346 -12.70918 -12.66021 -12.56298 -12.16169 -11.76282 -11.41129 -11.05971 -10.71880 -10.49776 -9.73620 -9.58533 -9.23656 -8.18209 -6.29933 -0.25780 0.57171 0.90672 0.93230 1.48604 1.49486 1.56988 1.95054 2.27215 2.45722 3.11403 3.58752 3.72461 4.10403 4.18630 4.28803 4.34216 4.38937 4.51036 4.62901 4.67903 4.71967 4.74269 4.80132 4.86570 4.93241 4.98810 5.07155 5.14580 5.31093 5.55745 5.62710 5.78488 6.19804 6.78328 6.81637 7.12501 7.40344 8.91620 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.004869 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.304472 B = 5748.788875 C = 6488.851825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.207 4.207 3 S 0.231 5.769 4 C -0.229 4.229 5 C -0.170 4.170 6 C 0.586 3.414 7 O -0.584 6.584 8 N -0.641 5.641 9 C 0.107 3.893 10 C 0.026 3.974 11 C -0.530 4.530 12 H 0.068 0.932 13 C 0.024 3.976 14 N -0.918 5.918 15 Si 0.959 3.041 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.107 3.893 20 C -0.087 4.087 21 C -0.092 4.092 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.174 0.826 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.272 2.504 -4.568 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.324 4.324 3 S 0.499 5.501 4 C -0.367 4.367 5 C -0.188 4.188 6 C 0.377 3.623 7 O -0.467 6.467 8 N -0.374 5.374 9 C -0.015 4.015 10 C 0.006 3.994 11 C -0.568 4.568 12 H 0.086 0.914 13 C -0.177 4.177 14 N -0.556 5.556 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.015 4.015 20 C -0.097 4.097 21 C -0.151 4.151 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.191 0.809 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.941 3.579 -4.528 16.954 hybrid contribution 1.801 -1.266 0.054 2.202 sum -14.140 2.313 -4.474 15.011 Atomic orbital electron populations 1.20435 0.84709 1.04194 1.04062 1.24621 1.02031 0.95031 1.10689 1.82563 0.91534 1.07214 1.68791 1.26303 1.06701 0.97933 1.05742 1.20147 0.94087 0.92523 1.12042 1.17679 0.80849 0.87891 0.75888 1.90633 1.81689 1.20530 1.53874 1.49869 1.04089 1.13343 1.70078 1.23589 0.90293 0.87192 1.00411 1.20265 0.93735 0.90889 0.94476 1.21174 0.98008 1.14356 1.23304 0.91409 1.25753 1.01714 0.96029 0.94194 1.70052 1.39022 1.19872 1.26641 0.85592 0.79831 0.77604 0.78535 1.19196 1.21208 1.19680 1.23258 0.80176 0.97636 1.00408 1.19832 0.89513 0.97918 1.02418 1.20559 1.01165 0.90786 1.02540 0.89710 0.89265 0.89581 0.80851 0.89841 0.91744 0.94194 0.92564 0.92274 0.89629 0.91429 0.89149 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.47 71.24 0.67 -0.43 16 2 C -0.21 -4.89 6.44 24.51 0.16 -4.73 16 3 S 0.23 5.38 22.99 -56.49 -1.30 4.08 16 4 C -0.23 -7.31 10.04 67.30 0.68 -6.63 16 5 C -0.17 -6.18 5.98 -19.87 -0.12 -6.30 16 6 C 0.59 25.22 8.02 86.59 0.69 25.92 16 7 O -0.58 -27.34 14.97 -4.17 -0.06 -27.40 16 8 N -0.64 -27.63 3.68 -861.97 -3.18 -30.80 16 9 C 0.11 4.59 6.45 83.27 0.54 5.13 16 10 C 0.03 1.23 3.80 -11.12 -0.04 1.19 16 11 C -0.53 -26.90 8.82 25.60 0.23 -26.67 16 12 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 13 C 0.02 1.22 5.46 84.65 0.46 1.68 16 14 N -0.92 -49.96 13.26 21.45 0.28 -49.67 16 15 Si 0.96 40.49 29.54 68.60 2.03 42.52 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 17 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.11 4.62 8.18 83.18 0.68 5.30 16 20 C -0.09 -2.63 6.01 -19.46 -0.12 -2.75 16 21 C -0.09 -2.55 9.35 71.24 0.67 -1.88 16 22 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 1.10 7.93 -2.39 -0.02 1.08 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.17 5.73 4.60 -2.91 -0.01 5.71 16 26 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16 27 H 0.06 2.72 6.07 -2.39 -0.01 2.71 16 28 H 0.04 2.14 8.11 -2.39 -0.02 2.12 16 29 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.09 3.47 8.10 -2.39 -0.02 3.45 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.09 1.85 7.38 -2.39 -0.02 1.83 16 34 H 0.06 2.18 5.90 -2.39 -0.01 2.16 16 Total: -1.00 -61.78 298.65 3.38 -58.40 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.11 Total: 13.06 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.50 Total: -10.18 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.89 Total: -80.48 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.30 Total: 4.08 kcal Total: -61.78 3.38 -58.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.915 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds