Wall clock time and date at job start Mon Mar 30 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37469 * 122.45013 * 2 1 4 4 C 1.36647 * 113.29718 * 180.20279 * 3 2 1 5 5 C 1.46579 * 125.45860 * 179.80098 * 4 3 2 6 6 O 1.21703 * 120.00026 * 359.71639 * 5 4 3 7 7 N 1.34777 * 119.99723 * 179.97438 * 5 4 3 8 8 C 1.47062 * 136.06058 * 359.36096 * 7 5 4 9 9 C 1.53242 * 88.08179 * 207.20016 * 8 7 5 10 10 C 1.50708 * 114.32516 * 220.46700 * 9 8 7 11 11 H 1.08000 * 119.99755 * 93.74968 * 10 9 8 12 12 C 1.37871 * 120.00172 * 273.76055 * 10 9 8 13 13 N 1.31519 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00183 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47315 * 89.99905 * 14 12 10 16 16 H 1.48500 * 109.47493 * 209.99607 * 14 12 10 17 17 H 1.48497 * 109.47059 * 330.00083 * 14 12 10 18 18 C 1.47070 * 136.05208 * 179.72279 * 7 5 4 19 19 S 1.75839 * 109.08263 * 359.53415 * 4 3 2 20 20 C 1.33824 * 122.44500 * 179.68654 * 2 1 3 21 21 C 1.50690 * 124.52805 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47257 * 270.31151 * 1 2 3 23 23 H 1.08999 * 109.47118 * 30.31669 * 1 2 3 24 24 H 1.09005 * 109.47370 * 150.31830 * 1 2 3 25 25 H 1.07999 * 123.35116 * 359.97438 * 3 2 1 26 26 H 1.09003 * 113.46647 * 321.92586 * 8 7 5 27 27 H 1.09001 * 113.47023 * 92.37230 * 8 7 5 28 28 H 1.08997 * 114.20144 * 87.73187 * 9 8 7 29 29 H 0.96996 * 120.00294 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.46729 * 267.62123 * 18 7 5 31 31 H 1.08999 * 113.47113 * 38.06704 * 18 7 5 32 32 H 1.09001 * 109.47545 * 180.02562 * 21 20 2 33 33 H 1.09003 * 109.47005 * 300.02662 * 21 20 2 34 34 H 1.09001 * 109.47499 * 60.02033 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1600 0.0000 4 6 3.5937 0.9427 -0.0044 5 6 4.6231 1.9862 -0.0097 6 8 4.3001 3.1595 -0.0156 7 7 5.9273 1.6461 -0.0133 8 6 6.6945 0.3916 -0.0020 9 6 7.8341 1.1548 0.6816 10 6 9.2099 0.7921 0.1847 11 1 9.6693 1.3705 -0.6032 12 6 9.8820 -0.2782 0.7358 13 7 9.3227 -0.9823 1.6955 14 14 11.5869 -0.7281 0.1194 15 1 12.6086 0.0026 0.9117 16 1 11.7975 -2.1905 0.2690 17 1 11.7103 -0.3541 -1.3123 18 6 7.2094 2.3666 -0.0237 19 16 3.8969 -0.7893 0.0049 20 6 2.2250 -1.1293 0.0062 21 6 1.6355 -2.5161 0.0132 22 1 -0.3633 0.0056 1.0276 23 1 -0.3633 0.8871 -0.5187 24 1 -0.3634 -0.8929 -0.5089 25 1 1.8019 2.1451 -0.0004 26 1 6.2533 -0.3815 0.6271 27 1 6.9503 0.0302 -0.9981 28 1 7.7628 1.1845 1.7688 29 1 9.7956 -1.7351 2.0835 30 1 7.6037 2.5365 -1.0255 31 1 7.2049 3.2695 0.5870 32 1 2.4391 -3.2526 0.0178 33 1 1.0198 -2.6447 0.9034 34 1 1.0211 -2.6544 -0.8765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598033854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:35 Heat of formation + Delta-G solvation = 19.533449 kcal Electronic energy + Delta-G solvation = -17335.191582 eV Core-core repulsion = 14553.566191 eV Total energy + Delta-G solvation = -2781.625391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56087 -38.43402 -36.88659 -32.74573 -32.14955 -29.84803 -29.17431 -26.22202 -25.11706 -24.77361 -22.93599 -20.52457 -18.99776 -18.06128 -17.33647 -16.69294 -15.74019 -15.46436 -14.91256 -14.58455 -14.30060 -13.89545 -13.36551 -13.26260 -12.89246 -12.64928 -12.46347 -12.30256 -11.77675 -11.71979 -11.66315 -11.54782 -11.30917 -11.01285 -10.94427 -10.58748 -10.27483 -9.75818 -9.25524 -9.09266 -8.62691 -8.50150 -8.22261 -7.89635 -6.21544 -4.27721 0.74334 1.71767 2.15137 2.51253 3.22347 3.29955 3.32186 3.48014 3.66752 4.30928 4.80875 4.92649 5.07508 5.11227 5.26524 5.37532 5.43685 5.58791 5.62184 5.78521 5.90459 5.92368 6.05263 6.10776 6.22797 6.38118 6.40738 6.49645 6.56695 6.61033 6.77225 7.50606 7.75897 8.12925 8.40273 8.66975 8.76643 9.39498 10.88172 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.005106 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.156291 B = 5482.843739 C = 6313.096315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.128 4.128 3 C -0.063 4.063 4 C -0.250 4.250 5 C 0.604 3.396 6 O -0.556 6.556 7 N -0.641 5.641 8 C 0.092 3.908 9 C 0.038 3.962 10 C -0.518 4.518 11 H 0.065 0.935 12 C 0.069 3.931 13 N -0.885 5.885 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.103 3.897 19 S 0.233 5.767 20 C -0.226 4.226 21 C -0.079 4.079 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.148 0.852 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.265 0.735 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 -3.690 -3.055 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C -0.097 4.097 4 C -0.370 4.370 5 C 0.394 3.606 6 O -0.438 6.438 7 N -0.374 5.374 8 C -0.031 4.031 9 C 0.018 3.982 10 C -0.556 4.556 11 H 0.083 0.917 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.019 4.019 19 S 0.503 5.497 20 C -0.345 4.345 21 C -0.137 4.137 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.391 -4.111 -2.935 13.381 hybrid contribution -0.479 0.471 -0.306 0.738 sum -12.871 -3.640 -3.241 13.763 Atomic orbital electron populations 1.20447 0.89962 1.02397 1.01976 1.18570 0.97446 0.91345 1.06762 1.20501 0.90956 0.99544 0.98653 1.24601 0.97760 0.97339 1.17348 1.16476 0.80237 0.86890 0.77016 1.90754 1.81187 1.18441 1.53410 1.49883 1.03298 1.13986 1.70249 1.23740 0.91140 0.87065 1.01125 1.20301 0.92615 0.88568 0.96690 1.20895 0.99904 1.14185 1.20647 0.91693 1.25028 0.98030 0.96008 0.94379 1.69951 1.38078 1.19035 1.25054 0.86523 0.84063 0.77635 0.79411 1.20445 1.21112 1.19656 1.23374 0.79160 0.98474 1.00847 1.83687 1.00794 0.98275 1.66944 1.24333 1.00450 1.00013 1.09707 1.20292 1.00677 0.90065 1.02669 0.91520 0.91668 0.91782 0.83473 0.91840 0.90263 0.91187 0.92551 0.90558 0.92119 0.91414 0.90729 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.84 36.01 0.35 -0.52 16 2 C -0.13 -1.72 5.78 -106.45 -0.62 -2.34 16 3 C -0.06 -1.00 9.80 -40.44 -0.40 -1.40 16 4 C -0.25 -4.54 6.45 -36.79 -0.24 -4.78 16 5 C 0.60 12.92 8.03 -12.90 -0.10 12.82 16 6 O -0.56 -13.20 17.62 5.19 0.09 -13.11 16 7 N -0.64 -13.67 3.69 -186.98 -0.69 -14.36 16 8 C 0.09 1.97 6.78 -8.64 -0.06 1.91 16 9 C 0.04 0.88 3.77 -91.39 -0.34 0.54 16 10 C -0.52 -13.03 8.83 -34.44 -0.30 -13.33 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.88 -23.74 13.26 55.43 0.74 -23.00 16 14 Si 0.90 19.79 29.54 -169.99 -5.02 14.76 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C 0.10 2.18 8.19 -8.50 -0.07 2.11 16 19 S 0.23 3.64 19.83 -107.50 -2.13 1.51 16 20 C -0.23 -2.98 6.28 -35.86 -0.23 -3.21 16 21 C -0.08 -0.76 9.37 36.00 0.34 -0.42 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 24 H 0.06 0.53 7.27 -51.93 -0.38 0.15 16 25 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.06 1.34 6.40 -51.93 -0.33 1.01 16 27 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 28 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -28.98 304.54 -8.65 -37.63 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.46 Total: -1.08 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.76 Total: -6.94 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.04 Total: -37.37 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.13 Total: 1.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.98 -8.65 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.162 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds