Wall clock time and date at job start Mon Mar 30 2020 06:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37469 * 122.45013 * 2 1 4 4 C 1.36647 * 113.29718 * 180.20279 * 3 2 1 5 5 C 1.46579 * 125.45860 * 179.80098 * 4 3 2 6 6 O 1.21703 * 120.00026 * 359.71639 * 5 4 3 7 7 N 1.34777 * 119.99723 * 179.97438 * 5 4 3 8 8 C 1.47062 * 136.06058 * 359.36096 * 7 5 4 9 9 C 1.53242 * 88.08179 * 207.20016 * 8 7 5 10 10 C 1.50708 * 114.32516 * 220.46700 * 9 8 7 11 11 H 1.08000 * 119.99755 * 93.74968 * 10 9 8 12 12 C 1.37871 * 120.00172 * 273.76055 * 10 9 8 13 13 N 1.31519 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00183 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47315 * 89.99905 * 14 12 10 16 16 H 1.48500 * 109.47493 * 209.99607 * 14 12 10 17 17 H 1.48497 * 109.47059 * 330.00083 * 14 12 10 18 18 C 1.47070 * 136.05208 * 179.72279 * 7 5 4 19 19 S 1.75839 * 109.08263 * 359.53415 * 4 3 2 20 20 C 1.33824 * 122.44500 * 179.68654 * 2 1 3 21 21 C 1.50690 * 124.52805 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47257 * 270.31151 * 1 2 3 23 23 H 1.08999 * 109.47118 * 30.31669 * 1 2 3 24 24 H 1.09005 * 109.47370 * 150.31830 * 1 2 3 25 25 H 1.07999 * 123.35116 * 359.97438 * 3 2 1 26 26 H 1.09003 * 113.46647 * 321.92586 * 8 7 5 27 27 H 1.09001 * 113.47023 * 92.37230 * 8 7 5 28 28 H 1.08997 * 114.20144 * 87.73187 * 9 8 7 29 29 H 0.96996 * 120.00294 * 180.02562 * 13 12 10 30 30 H 1.09000 * 113.46729 * 267.62123 * 18 7 5 31 31 H 1.08999 * 113.47113 * 38.06704 * 18 7 5 32 32 H 1.09001 * 109.47545 * 180.02562 * 21 20 2 33 33 H 1.09003 * 109.47005 * 300.02662 * 21 20 2 34 34 H 1.09001 * 109.47499 * 60.02033 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1600 0.0000 4 6 3.5937 0.9427 -0.0044 5 6 4.6231 1.9862 -0.0097 6 8 4.3001 3.1595 -0.0156 7 7 5.9273 1.6461 -0.0133 8 6 6.6945 0.3916 -0.0020 9 6 7.8341 1.1548 0.6816 10 6 9.2099 0.7921 0.1847 11 1 9.6693 1.3705 -0.6032 12 6 9.8820 -0.2782 0.7358 13 7 9.3227 -0.9823 1.6955 14 14 11.5869 -0.7281 0.1194 15 1 12.6086 0.0026 0.9117 16 1 11.7975 -2.1905 0.2690 17 1 11.7103 -0.3541 -1.3123 18 6 7.2094 2.3666 -0.0237 19 16 3.8969 -0.7893 0.0049 20 6 2.2250 -1.1293 0.0062 21 6 1.6355 -2.5161 0.0132 22 1 -0.3633 0.0056 1.0276 23 1 -0.3633 0.8871 -0.5187 24 1 -0.3634 -0.8929 -0.5089 25 1 1.8019 2.1451 -0.0004 26 1 6.2533 -0.3815 0.6271 27 1 6.9503 0.0302 -0.9981 28 1 7.7628 1.1845 1.7688 29 1 9.7956 -1.7351 2.0835 30 1 7.6037 2.5365 -1.0255 31 1 7.2049 3.2695 0.5870 32 1 2.4391 -3.2526 0.0178 33 1 1.0198 -2.6447 0.9034 34 1 1.0211 -2.6544 -0.8765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:35 Heat of formation + Delta-G solvation = 3.386553 kcal Electronic energy + Delta-G solvation = -17335.891763 eV Core-core repulsion = 14553.566191 eV Total energy + Delta-G solvation = -2782.325573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23706 -39.69268 -38.51598 -34.67820 -33.30243 -31.25432 -30.35287 -27.73675 -26.89303 -26.13394 -24.24464 -22.17952 -20.45348 -19.31925 -18.99464 -18.46678 -17.11613 -16.97846 -16.67334 -16.24342 -15.50443 -15.08621 -14.97728 -14.36566 -14.20011 -13.93233 -13.59872 -13.45763 -13.35966 -13.24430 -12.79180 -12.76452 -12.68207 -12.66825 -12.58197 -12.21677 -11.71481 -11.53063 -11.04493 -10.91760 -10.55011 -9.86982 -9.51411 -9.34728 -8.17134 -6.29180 -0.51123 0.49144 0.97844 1.31516 1.48520 1.50606 1.60050 1.85493 2.11243 2.46538 3.12443 3.46497 3.86478 4.14989 4.18107 4.25412 4.31606 4.46724 4.57694 4.64322 4.65758 4.71649 4.73607 4.80968 4.89804 4.91254 5.03795 5.08429 5.11368 5.38892 5.55562 5.56533 5.79318 6.19504 6.71610 6.79646 6.99249 7.41207 8.93087 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.005106 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.156291 B = 5482.843739 C = 6313.096315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.138 4.138 3 C -0.050 4.050 4 C -0.297 4.297 5 C 0.601 3.399 6 O -0.590 6.590 7 N -0.645 5.645 8 C 0.109 3.891 9 C 0.027 3.973 10 C -0.529 4.529 11 H 0.069 0.931 12 C 0.024 3.976 13 N -0.917 5.917 14 Si 0.960 3.040 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.264 1.264 18 C 0.108 3.892 19 S 0.212 5.788 20 C -0.201 4.201 21 C -0.082 4.082 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -5.159 -3.901 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.150 4.150 3 C -0.084 4.084 4 C -0.417 4.417 5 C 0.393 3.607 6 O -0.475 6.475 7 N -0.377 5.377 8 C -0.014 4.014 9 C 0.008 3.992 10 C -0.567 4.567 11 H 0.087 0.913 12 C -0.177 4.177 13 N -0.555 5.555 14 Si 0.785 3.215 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.014 4.014 19 S 0.482 5.518 20 C -0.321 4.321 21 C -0.140 4.140 22 H 0.097 0.903 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.167 0.833 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.832 -5.579 -3.789 15.388 hybrid contribution -0.159 0.907 -0.017 0.921 sum -13.991 -4.672 -3.806 15.234 Atomic orbital electron populations 1.20542 0.86878 1.03889 1.03194 1.18901 0.99471 0.90195 1.06423 1.20799 0.90389 1.00775 0.96464 1.24356 0.97730 0.97839 1.21761 1.16941 0.80510 0.87315 0.75978 1.90710 1.81653 1.19997 1.55139 1.49882 1.03562 1.13763 1.70540 1.23474 0.90032 0.86909 1.00981 1.20174 0.93131 0.90704 0.95229 1.21181 1.00653 1.14220 1.20683 0.91259 1.25762 1.01489 0.95954 0.94499 1.70060 1.39577 1.19601 1.26257 0.85524 0.79638 0.77182 0.79134 1.20341 1.20961 1.18795 1.23301 0.79210 0.97669 1.01216 1.83658 1.03588 0.96820 1.67708 1.24806 0.98520 1.01951 1.06803 1.20509 1.01294 0.87496 1.04697 0.90318 0.90971 0.89622 0.83330 0.91908 0.89699 0.94144 0.92515 0.89245 0.92068 0.90924 0.88680 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.84 71.24 0.70 -0.66 16 2 C -0.14 -3.36 5.78 -21.05 -0.12 -3.48 16 3 C -0.05 -1.54 9.80 21.72 0.21 -1.32 16 4 C -0.30 -10.87 6.45 24.08 0.16 -10.71 16 5 C 0.60 26.36 8.03 86.42 0.69 27.06 16 6 O -0.59 -28.83 17.62 -4.36 -0.08 -28.91 16 7 N -0.65 -28.19 3.69 -863.68 -3.19 -31.38 16 8 C 0.11 4.73 6.78 83.10 0.56 5.30 16 9 C 0.03 1.30 3.77 -11.29 -0.04 1.26 16 10 C -0.53 -26.82 8.83 25.60 0.23 -26.59 16 11 H 0.07 3.38 7.81 -2.91 -0.02 3.35 16 12 C 0.02 1.21 5.46 84.65 0.46 1.67 16 13 N -0.92 -49.86 13.26 21.45 0.28 -49.58 16 14 Si 0.96 40.40 29.54 68.60 2.03 42.43 16 15 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 C 0.11 4.66 8.19 83.18 0.68 5.34 16 19 S 0.21 6.52 19.83 -56.49 -1.12 5.40 16 20 C -0.20 -4.79 6.28 24.68 0.15 -4.64 16 21 C -0.08 -1.25 9.37 71.23 0.67 -0.58 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 24 H 0.08 1.01 7.27 -2.38 -0.02 0.99 16 25 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 26 H 0.06 2.73 6.40 -2.39 -0.02 2.71 16 27 H 0.08 3.57 8.10 -2.39 -0.02 3.55 16 28 H 0.04 2.17 8.11 -2.39 -0.02 2.15 16 29 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 30 H 0.09 3.60 8.10 -2.39 -0.02 3.59 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.07 1.08 8.11 -2.39 -0.02 1.06 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.13 7.89 -2.39 -0.02 1.11 16 Total: -1.00 -62.99 304.54 3.38 -59.62 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.10 Total: 9.78 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 4.35 Total: -7.36 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.90 Total: -80.95 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.08 Total: -28.91 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.12 Total: 5.40 kcal Total: -62.99 3.38 -59.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.002 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds