Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32764 * 124.71265 * 2 1 4 4 C 1.44429 * 113.08655 * 179.97438 * 3 2 1 5 5 C 1.47191 * 123.46273 * 179.97438 * 4 3 2 6 6 O 1.21637 * 120.00062 * 173.35545 * 5 4 3 7 7 N 1.34778 * 120.00001 * 353.35508 * 5 4 3 8 8 C 1.47068 * 136.05663 * 3.63094 * 7 5 4 9 9 C 1.53236 * 88.08358 * 207.20702 * 8 7 5 10 10 C 1.50703 * 114.32840 * 220.46994 * 9 8 7 11 11 H 1.07999 * 119.99494 * 93.76058 * 10 9 8 12 12 C 1.37872 * 120.00134 * 273.76132 * 10 9 8 13 13 N 1.31518 * 119.99881 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00052 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47107 * 90.00002 * 14 12 10 16 16 H 1.48497 * 109.46971 * 210.00010 * 14 12 10 17 17 H 1.48499 * 109.46988 * 329.99894 * 14 12 10 18 18 C 1.47065 * 136.05865 * 184.01122 * 7 5 4 19 19 C 1.36007 * 113.07569 * 359.97438 * 4 3 2 20 20 C 1.50698 * 124.58845 * 179.97438 * 19 4 3 21 21 S 1.70449 * 110.81797 * 0.23214 * 19 4 3 22 22 H 1.09004 * 109.46757 * 89.99970 * 1 2 3 23 23 H 1.09002 * 109.47068 * 209.99695 * 1 2 3 24 24 H 1.08994 * 109.47578 * 330.00262 * 1 2 3 25 25 H 1.08003 * 123.45753 * 0.02562 * 3 2 1 26 26 H 1.09000 * 113.46897 * 321.93792 * 8 7 5 27 27 H 1.09000 * 113.46341 * 92.37795 * 8 7 5 28 28 H 1.09005 * 114.01565 * 87.71516 * 9 8 7 29 29 H 0.97000 * 119.99831 * 179.97438 * 13 12 10 30 30 H 1.09007 * 113.46436 * 267.62174 * 18 7 5 31 31 H 1.08999 * 113.47093 * 38.05538 * 18 7 5 32 32 H 1.09002 * 109.47027 * 90.00789 * 20 19 4 33 33 H 1.09002 * 109.47501 * 330.00298 * 20 19 4 34 34 H 1.09004 * 109.47128 * 210.00409 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0913 0.0000 4 6 3.6777 0.8003 0.0006 5 6 4.7201 1.8395 0.0002 6 8 5.8895 1.5279 0.1226 7 7 4.3789 3.1362 -0.1359 8 6 3.1237 3.8958 -0.2376 9 6 3.8912 4.9586 -1.0311 10 6 3.5233 6.3783 -0.6844 11 1 4.0950 6.9190 0.0553 12 6 2.4568 6.9869 -1.3115 13 7 2.1355 8.2257 -1.0085 14 14 1.4684 6.0519 -2.5914 15 1 0.3494 5.3364 -1.9270 16 1 0.9224 7.0064 -3.5894 17 1 2.3475 5.0696 -3.2752 18 6 5.0979 4.4136 -0.2547 19 6 3.9477 -0.5327 0.0016 20 6 5.3334 -1.1249 0.0018 21 16 2.5064 -1.4427 -0.0046 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 1.8614 2.0939 0.0004 26 1 2.3561 3.3895 -0.8229 27 1 2.7541 4.2541 0.7232 28 1 3.9281 4.7704 -2.1041 29 1 1.3854 8.6540 -1.4500 30 1 5.2596 4.9112 0.7016 31 1 6.0057 4.3466 -0.8544 32 1 5.6676 -1.2670 1.0296 33 1 6.0172 -0.4497 -0.5126 34 1 5.3177 -2.0865 -0.5113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = 10.801807 kcal Electronic energy + Delta-G solvation = -17689.303084 eV Core-core repulsion = 14907.299060 eV Total energy + Delta-G solvation = -2782.004023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45860 -39.33879 -37.97209 -34.69444 -33.97352 -31.76706 -30.11790 -27.67641 -27.04387 -25.85546 -24.24835 -22.01656 -20.67022 -19.74302 -19.13597 -18.18650 -17.15977 -16.96713 -16.67697 -15.98138 -15.56080 -14.96855 -14.75456 -14.69092 -14.26192 -14.14086 -14.10579 -13.85130 -13.48390 -13.45335 -12.93259 -12.73199 -12.61942 -12.49759 -12.41355 -11.89304 -11.81932 -11.57207 -11.20576 -10.79848 -10.62510 -9.79839 -9.56341 -9.31387 -8.28180 -6.36188 -0.26342 0.47984 0.83946 0.92089 1.39231 1.43551 1.51966 1.98517 2.26709 2.37312 3.01251 3.54302 3.68126 3.93317 4.04245 4.20373 4.24186 4.37260 4.47245 4.53770 4.62523 4.63769 4.66835 4.75340 4.76261 4.78040 5.03148 5.09231 5.15858 5.22931 5.35196 5.36554 5.58643 6.27542 6.69515 6.78566 7.09850 7.31220 8.87241 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022710 B = 0.006140 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.621000 B = 4559.245785 C = 5522.239078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.202 4.202 3 C -0.140 4.140 4 C -0.189 4.189 5 C 0.591 3.409 6 O -0.583 6.583 7 N -0.640 5.640 8 C 0.095 3.905 9 C -0.017 4.017 10 C -0.511 4.511 11 H 0.043 0.957 12 C 0.025 3.975 13 N -0.942 5.942 14 Si 0.933 3.067 15 H -0.253 1.253 16 H -0.289 1.289 17 H -0.248 1.248 18 C 0.117 3.883 19 C -0.162 4.162 20 C -0.088 4.088 21 S 0.238 5.762 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.269 0.731 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -21.075 0.463 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.319 4.319 3 C -0.168 4.168 4 C -0.206 4.206 5 C 0.382 3.618 6 O -0.467 6.467 7 N -0.372 5.372 8 C -0.027 4.027 9 C -0.037 4.037 10 C -0.549 4.549 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.581 5.581 14 Si 0.756 3.244 15 H -0.178 1.178 16 H -0.215 1.215 17 H -0.172 1.172 18 C -0.005 4.005 19 C -0.282 4.282 20 C -0.146 4.146 21 S 0.504 5.496 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.170 0.830 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.575 -22.844 0.519 23.303 hybrid contribution 0.222 2.155 -0.299 2.187 sum -4.353 -20.689 0.221 21.143 Atomic orbital electron populations 1.20494 0.85183 1.04485 1.04037 1.24738 1.01967 0.95801 1.09351 1.21609 0.90679 1.00927 1.03571 1.20059 0.93702 0.92810 1.14013 1.17610 0.87743 0.80735 0.75668 1.90660 1.20718 1.81558 1.53754 1.49682 1.12849 1.04125 1.70592 1.23724 0.87903 0.89929 1.01176 1.20767 0.93487 0.93285 0.96120 1.20886 1.14413 0.96432 1.23206 0.93847 1.25805 0.98034 0.95217 0.98370 1.70033 1.29484 1.14139 1.44400 0.85923 0.79812 0.79195 0.79440 1.17754 1.21465 1.17183 1.23020 0.97316 0.80110 1.00091 1.24778 1.03749 0.96579 1.03127 1.20553 0.89329 1.00994 1.03704 1.82492 0.90751 1.06678 1.69653 0.89470 0.89244 0.89976 0.83031 0.90325 0.89409 0.91402 0.92235 0.90318 0.91497 0.89918 0.90835 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.35 71.24 0.74 -0.53 16 2 C -0.20 -4.48 6.44 24.51 0.16 -4.32 16 3 C -0.14 -4.01 9.35 22.67 0.21 -3.80 16 4 C -0.19 -6.25 5.98 -19.87 -0.12 -6.37 16 5 C 0.59 23.50 8.01 86.59 0.69 24.20 16 6 O -0.58 -25.59 14.94 -4.15 -0.06 -25.65 16 7 N -0.64 -25.43 3.69 -863.04 -3.19 -28.62 16 8 C 0.10 3.64 5.95 83.09 0.49 4.13 16 9 C -0.02 -0.74 2.99 -11.29 -0.03 -0.78 16 10 C -0.51 -26.91 9.38 25.60 0.24 -26.67 16 11 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 12 C 0.02 1.33 5.47 84.65 0.46 1.79 16 13 N -0.94 -55.18 13.96 21.45 0.30 -54.88 16 14 Si 0.93 40.07 27.42 68.60 1.88 41.95 16 15 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 17 H -0.25 -10.01 6.21 99.48 0.62 -9.40 16 18 C 0.12 4.80 8.19 83.18 0.68 5.48 16 19 C -0.16 -4.43 6.34 25.17 0.16 -4.28 16 20 C -0.09 -2.18 9.52 71.24 0.68 -1.50 16 21 S 0.24 4.66 22.94 -56.49 -1.30 3.36 16 22 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.15 4.38 4.71 -2.91 -0.01 4.36 16 26 H 0.08 2.71 6.05 -2.39 -0.01 2.70 16 27 H 0.09 3.34 8.10 -2.39 -0.02 3.33 16 28 H 0.07 2.97 6.50 -2.38 -0.02 2.95 16 29 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 30 H 0.08 3.22 8.10 -2.38 -0.02 3.21 16 31 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.27 6.12 -2.39 -0.01 2.25 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.23 296.11 3.02 -62.21 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.02 Total: 14.27 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.36 Total: -12.64 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -2.89 Total: -83.50 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.88 Total: 41.95 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Total: -65.23 3.02 -62.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.012 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds