Wall clock time and date at job start Mon Mar 30 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99510 * 2 1 4 4 H 1.48496 * 109.47283 * 269.99630 * 3 2 1 5 5 H 1.48497 * 109.47175 * 29.99859 * 3 2 1 6 6 H 1.48498 * 109.46792 * 149.99746 * 3 2 1 7 7 C 1.37873 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00248 * 180.27529 * 7 2 1 9 9 C 1.50704 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.73955 * 278.73783 * 9 7 2 11 11 N 1.47822 * 86.03439 * 222.08596 * 10 9 7 12 12 C 1.34770 * 134.45199 * 204.64333 * 11 10 9 13 13 O 1.21570 * 119.99523 * 174.65520 * 12 11 10 14 14 C 1.47763 * 120.00693 * 354.65802 * 12 11 10 15 15 C 1.39630 * 120.15047 * 335.03802 * 14 12 11 16 16 C 1.37896 * 119.86351 * 179.69613 * 15 14 12 17 17 C 1.38424 * 120.18192 * 0.60228 * 16 15 14 18 18 C 1.38270 * 120.31733 * 359.67536 * 17 16 15 19 19 C 1.38151 * 120.12847 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.09347 * 179.97438 * 19 18 17 21 21 C 1.47581 * 91.05231 * 24.54931 * 11 10 9 22 22 H 0.96996 * 120.00372 * 0.02562 * 1 2 3 23 23 H 1.08998 * 112.94434 * 50.33425 * 9 7 2 24 24 H 1.09003 * 113.76869 * 336.34818 * 10 9 7 25 25 H 1.08997 * 113.76626 * 107.75203 * 10 9 7 26 26 H 1.07999 * 120.06734 * 359.97438 * 15 14 12 27 27 H 1.08001 * 119.91442 * 180.27688 * 16 15 14 28 28 H 1.08003 * 119.83995 * 179.69378 * 17 16 15 29 29 H 1.08001 * 119.93151 * 180.02562 * 18 17 16 30 30 H 1.08993 * 113.77219 * 221.15080 * 21 11 10 31 31 H 1.09002 * 113.87186 * 89.76632 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0050 9 6 1.2512 -2.4991 0.0005 10 6 0.7553 -2.9285 1.3933 11 7 1.1915 -4.2896 1.0159 12 6 0.8420 -5.5332 1.4002 13 8 1.3160 -6.4996 0.8352 14 6 -0.1173 -5.7221 2.5081 15 6 -0.2695 -4.7317 3.4806 16 6 -1.1710 -4.9114 4.5084 17 6 -1.9156 -6.0757 4.5854 18 6 -1.7668 -7.0639 3.6297 19 6 -0.8718 -6.8948 2.5909 20 17 -0.6852 -8.1363 1.3920 21 6 2.1610 -3.7401 0.0484 22 1 -0.4850 0.8400 -0.0004 23 1 0.4841 -2.5470 -0.7724 24 1 1.3261 -2.4964 2.2153 25 1 -0.3223 -2.8320 1.5249 26 1 0.3144 -3.8248 3.4252 27 1 -1.2926 -4.1440 5.2585 28 1 -2.6165 -6.2128 5.3956 29 1 -2.3513 -7.9697 3.6956 30 1 2.2036 -4.2902 -0.8915 31 1 3.1462 -3.5464 0.4727 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598035933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:01 Heat of formation + Delta-G solvation = 5.972174 kcal Electronic energy + Delta-G solvation = -17272.659915 eV Core-core repulsion = 14352.569663 eV Total energy + Delta-G solvation = -2920.090253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39767 -39.78473 -38.42514 -37.37803 -34.63820 -32.73921 -31.71669 -30.50432 -27.14780 -26.95283 -24.61366 -23.50640 -21.99085 -20.31215 -18.75598 -18.28173 -17.65276 -16.97903 -16.72398 -16.39625 -15.73538 -15.53340 -15.15710 -14.86373 -14.21075 -14.16667 -13.92230 -13.33812 -13.13368 -12.92263 -12.74803 -12.70506 -12.49424 -12.36236 -12.14284 -12.03093 -11.31867 -11.14044 -10.66847 -10.49397 -10.11744 -9.81059 -9.51027 -8.15296 -6.26875 -0.26021 0.16460 1.13076 1.48354 1.50948 1.59890 1.79227 1.93344 2.47118 2.68463 3.15631 3.38837 3.72165 4.02271 4.19303 4.28697 4.32609 4.42111 4.42637 4.58107 4.65624 4.75207 4.81189 4.94036 5.04053 5.18600 5.21731 5.34938 5.59458 5.74884 5.81808 6.22153 6.80371 6.82457 7.11659 7.43285 8.94524 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.005147 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.933138 B = 5439.199904 C = 6095.522557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.022 3.978 10 C 0.122 3.878 11 N -0.637 5.637 12 C 0.555 3.445 13 O -0.572 6.572 14 C -0.147 4.147 15 C -0.084 4.084 16 C -0.118 4.118 17 C -0.071 4.071 18 C -0.121 4.121 19 C -0.011 4.011 20 Cl -0.063 7.063 21 C 0.111 3.889 22 H 0.265 0.735 23 H 0.032 0.968 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.136 0.864 27 H 0.167 0.833 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.060 0.940 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -8.594 11.501 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.085 0.915 9 C 0.003 3.997 10 C 0.000 4.000 11 N -0.371 5.371 12 C 0.347 3.653 13 O -0.454 6.454 14 C -0.151 4.151 15 C -0.103 4.103 16 C -0.135 4.135 17 C -0.089 4.089 18 C -0.139 4.139 19 C -0.039 4.039 20 Cl -0.033 7.033 21 C -0.011 4.011 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.185 0.815 28 H 0.197 0.803 29 H 0.181 0.819 30 H 0.079 0.921 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.863 -9.283 11.144 15.297 hybrid contribution 0.486 0.743 -0.634 1.091 sum -4.377 -8.540 10.510 14.232 Atomic orbital electron populations 1.70059 1.07382 1.27863 1.50297 1.25730 0.95535 1.02424 0.94048 0.85559 0.78875 0.79124 0.78116 1.20585 1.20975 1.18827 1.21248 0.93358 0.90461 1.51707 0.91511 1.20416 0.94108 0.92041 0.93166 1.23561 0.99227 0.76349 1.00843 1.50392 1.40117 1.04835 1.41716 1.18393 0.82138 0.81736 0.83075 1.90740 1.57707 1.39628 1.57281 1.19841 1.00580 0.96480 0.98207 1.21722 0.98095 0.97133 0.93359 1.21650 0.94793 0.99187 0.97915 1.21814 0.97759 0.91418 0.97942 1.21413 0.97562 1.02164 0.92762 1.21292 0.98939 0.89951 0.93702 1.98382 1.96824 1.51851 1.56279 1.23403 0.94018 0.92534 0.91156 0.92623 0.95012 0.89446 0.91889 0.84609 0.81511 0.80254 0.81914 0.92118 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.29 21.45 0.28 -49.15 16 2 C 0.02 1.17 5.46 84.65 0.46 1.63 16 3 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.53 -26.54 8.77 25.60 0.22 -26.31 16 8 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16 9 C 0.02 1.04 3.60 -10.88 -0.04 1.00 16 10 C 0.12 5.07 5.86 86.44 0.51 5.57 16 11 N -0.64 -26.73 3.58 -839.59 -3.00 -29.73 16 12 C 0.56 23.33 7.70 86.76 0.67 24.00 16 13 O -0.57 -26.81 15.27 -3.94 -0.06 -26.87 16 14 C -0.15 -5.07 5.82 -20.07 -0.12 -5.19 16 15 C -0.08 -2.37 8.83 22.52 0.20 -2.17 16 16 C -0.12 -2.29 10.03 22.23 0.22 -2.06 16 17 C -0.07 -1.16 10.04 22.32 0.22 -0.93 16 18 C -0.12 -2.54 9.82 22.26 0.22 -2.32 16 19 C -0.01 -0.34 6.34 22.60 0.14 -0.20 16 20 Cl -0.06 -2.06 26.35 -2.72 -0.07 -2.14 16 21 C 0.11 4.68 8.40 86.49 0.73 5.41 16 22 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 23 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 3.42 7.71 -2.39 -0.02 3.40 16 25 H 0.06 2.64 7.86 -2.39 -0.02 2.62 16 26 H 0.14 3.89 5.56 -2.91 -0.02 3.88 16 27 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 31 H 0.09 3.49 8.09 -2.39 -0.02 3.48 16 Total: -1.00 -63.56 285.80 3.76 -59.80 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.15 Total: 7.50 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 3.44 Total: -1.57 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.72 Total: -78.89 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.06 Total: -26.87 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.07 Total: -2.14 kcal Total: -63.56 3.76 -59.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.770 kcal (2) G-P(sol) polarization free energy of solvation -63.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds