Wall clock time and date at job start Mon Mar 30 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48497 * 109.46991 * 270.00169 * 3 2 1 5 5 H 1.48497 * 109.46717 * 30.00126 * 3 2 1 6 6 H 1.48498 * 109.47147 * 150.00174 * 3 2 1 7 7 C 1.37884 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 359.97438 * 7 2 1 10 10 C 1.53496 * 114.20414 * 180.02562 * 9 7 2 11 11 N 1.47068 * 87.98618 * 220.14786 * 10 9 7 12 12 C 1.34774 * 136.05880 * 207.09233 * 11 10 9 13 13 O 1.21558 * 119.99778 * 5.59912 * 12 11 10 14 14 C 1.47793 * 119.99761 * 185.60710 * 12 11 10 15 15 C 1.39616 * 120.13101 * 6.44105 * 14 12 11 16 16 C 1.37888 * 119.86445 * 180.27609 * 15 14 12 17 17 C 1.38515 * 120.13443 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.86867 * 180.02562 * 17 16 15 19 19 C 1.38519 * 120.26238 * 359.97438 * 17 16 15 20 20 C 1.37890 * 120.13065 * 0.02562 * 19 17 16 21 21 C 1.47073 * 87.88349 * 27.33891 * 11 10 9 22 22 H 0.96992 * 119.99577 * 359.97438 * 1 2 3 23 23 H 1.08997 * 113.27961 * 313.06243 * 9 7 2 24 24 H 1.08993 * 113.46993 * 105.36330 * 10 9 7 25 25 H 1.09003 * 113.52069 * 334.93101 * 10 9 7 26 26 H 1.07996 * 120.06657 * 0.25219 * 15 14 12 27 27 H 1.07999 * 119.93292 * 179.97438 * 16 15 14 28 28 H 1.08001 * 119.93203 * 179.97438 * 19 17 16 29 29 H 1.08001 * 120.06777 * 180.02562 * 20 19 17 30 30 H 1.08998 * 113.46497 * 87.43736 * 21 11 10 31 31 H 1.08994 * 113.47140 * 217.88077 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2073 -4.3594 -0.9482 12 6 0.8318 -5.6140 -1.2668 13 8 1.2520 -6.5560 -0.6236 14 6 -0.0907 -5.8443 -2.3983 15 6 -0.4689 -4.7821 -3.2217 16 6 -1.3343 -5.0021 -4.2723 17 6 -1.8288 -6.2737 -4.5113 18 17 -2.9175 -6.5431 -5.8363 19 6 -1.4573 -7.3315 -3.6977 20 6 -0.5924 -7.1238 -2.6441 21 6 0.8604 -3.0033 -1.3995 22 1 -0.4849 0.8400 0.0004 23 1 0.4439 -2.5306 0.7313 24 1 2.1878 -4.2513 0.9635 25 1 3.1375 -3.5676 -0.4240 26 1 -0.0846 -3.7901 -3.0358 27 1 -1.6279 -4.1812 -4.9097 28 1 -1.8464 -8.3207 -3.8887 29 1 -0.3031 -7.9493 -2.0107 30 1 1.5092 -2.6304 -2.1920 31 1 -0.1982 -2.8791 -1.6273 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036091.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:02 Heat of formation + Delta-G solvation = 7.698551 kcal Electronic energy + Delta-G solvation = -16993.189143 eV Core-core repulsion = 14073.173752 eV Total energy + Delta-G solvation = -2920.015391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.57235 -39.92893 -38.66212 -37.45556 -34.67540 -32.64774 -32.11944 -30.53512 -27.22369 -26.88302 -24.58181 -23.70984 -22.09609 -20.39244 -18.80345 -18.26031 -17.95157 -17.10266 -16.67832 -16.29217 -15.89835 -15.56597 -15.23813 -14.61200 -14.44306 -14.27627 -13.97843 -13.32492 -13.27584 -13.19664 -12.78266 -12.70711 -12.52429 -12.48032 -12.17614 -11.86077 -11.46476 -11.04382 -10.84447 -10.49689 -10.19005 -9.95272 -9.56421 -8.15984 -6.27161 -0.43277 0.18381 0.98406 1.48901 1.51868 1.60554 1.66388 1.89790 2.47249 2.65739 3.13885 3.39592 3.66942 3.79662 4.12230 4.15749 4.25795 4.35799 4.44048 4.53675 4.69453 4.71816 4.84482 4.86630 4.98657 5.05354 5.09414 5.27225 5.58394 5.59665 5.81633 6.22444 6.78157 6.81897 7.04446 7.43176 8.93931 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.004568 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.345887 B = 6127.843872 C = 7076.252072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.023 3.977 10 C 0.105 3.895 11 N -0.639 5.639 12 C 0.568 3.432 13 O -0.591 6.591 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.116 4.116 17 C -0.014 4.014 18 Cl -0.054 7.054 19 C -0.112 4.112 20 C -0.056 4.056 21 C 0.106 3.894 22 H 0.265 0.735 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -9.134 -10.885 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.004 3.996 10 C -0.017 4.017 11 N -0.371 5.371 12 C 0.361 3.639 13 O -0.475 6.475 14 C -0.144 4.144 15 C -0.105 4.105 16 C -0.135 4.135 17 C -0.041 4.041 18 Cl -0.025 7.025 19 C -0.131 4.131 20 C -0.075 4.075 21 C -0.016 4.016 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.165 0.835 27 H 0.177 0.823 28 H 0.185 0.815 29 H 0.163 0.837 30 H 0.108 0.892 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.198 -9.727 -10.718 15.070 hybrid contribution 0.239 0.907 0.163 0.952 sum -3.959 -8.820 -10.555 14.313 Atomic orbital electron populations 1.70052 1.07408 1.27897 1.50181 1.25728 0.95508 1.02439 0.93947 0.85566 0.78681 0.79069 0.78414 1.19750 1.21449 1.19193 1.21198 0.93396 0.90305 1.51713 0.91356 1.20284 0.94611 0.91761 0.92965 1.23303 0.94536 0.91881 0.91947 1.49878 1.42158 1.04921 1.40105 1.18272 0.81240 0.80695 0.83708 1.90681 1.59860 1.42017 1.54930 1.20035 1.01055 0.96119 0.97164 1.21986 0.95634 0.99544 0.93296 1.21250 0.97360 0.96606 0.98244 1.21321 0.95493 0.95224 0.92106 1.98383 1.61995 1.96655 1.45421 1.21243 0.97975 0.99924 0.93938 1.21316 0.94062 0.95708 0.96402 1.23623 1.00217 0.76574 1.01165 0.92612 0.94265 0.92398 0.89167 0.83480 0.82313 0.81535 0.83749 0.89161 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.26 21.45 0.28 -48.57 16 2 C 0.02 1.22 5.46 84.66 0.46 1.68 16 3 Si 0.96 39.65 29.54 68.60 2.03 41.67 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.53 -25.90 8.83 25.60 0.23 -25.68 16 8 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 1.06 3.79 -11.12 -0.04 1.02 16 10 C 0.11 4.29 8.18 83.18 0.68 4.97 16 11 N -0.64 -25.57 3.67 -861.27 -3.16 -28.73 16 12 C 0.57 22.59 8.01 86.77 0.69 23.29 16 13 O -0.59 -26.60 17.15 -3.90 -0.07 -26.67 16 14 C -0.14 -4.52 5.87 -20.08 -0.12 -4.64 16 15 C -0.09 -2.44 9.14 22.52 0.21 -2.24 16 16 C -0.12 -2.69 9.81 22.25 0.22 -2.47 16 17 C -0.01 -0.31 6.33 22.40 0.14 -0.17 16 18 Cl -0.05 -0.98 28.95 -2.72 -0.08 -1.06 16 19 C -0.11 -2.37 9.81 22.25 0.22 -2.16 16 20 C -0.06 -1.49 9.59 22.52 0.22 -1.28 16 21 C 0.11 4.21 5.71 83.27 0.48 4.69 16 22 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 23 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.09 3.41 8.10 -2.39 -0.02 3.39 16 26 H 0.15 4.32 4.17 -2.91 -0.01 4.31 16 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.14 3.78 7.66 -2.91 -0.02 3.75 16 30 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 31 H 0.07 2.71 6.73 -2.39 -0.02 2.69 16 Total: -1.00 -58.30 287.66 3.54 -54.76 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.15 Total: 11.57 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 3.38 Total: -2.98 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.87 Total: -77.29 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.07 Total: -26.67 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -58.30 3.54 -54.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036091.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.461 kcal (2) G-P(sol) polarization free energy of solvation -58.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds