Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47199 * 269.99589 * 3 2 1 5 5 H 1.48497 * 109.47283 * 29.99624 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99748 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.53003 * 109.47295 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47295 * 179.97438 * 15 14 12 17 17 C 1.33391 * 125.20645 * 89.99562 * 16 15 14 18 18 C 1.38421 * 114.92301 * 179.97438 * 17 16 15 19 19 C 1.33395 * 114.92292 * 0.02562 * 18 17 16 20 20 S 1.75888 * 125.20153 * 269.69138 * 16 15 14 21 21 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 22 22 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 24 24 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 25 25 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 26 26 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 27 27 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 28 28 H 1.09003 * 109.46810 * 300.00156 * 15 14 12 29 29 H 1.09001 * 109.47213 * 59.99586 * 15 14 12 30 30 H 1.07999 * 122.53698 * 359.96174 * 17 16 15 31 31 H 1.07993 * 122.54279 * 180.02562 * 18 17 16 32 32 H 1.07997 * 125.20503 * 180.02562 * 19 18 17 33 33 H 1.09003 * 113.77049 * 270.34039 * 21 11 10 34 34 H 1.08993 * 113.77081 * 138.93800 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 6 -0.4292 -7.2263 -2.6894 16 6 -1.4949 -7.4212 -3.7369 17 6 -1.2772 -7.4959 -5.0508 18 6 -2.4130 -7.6782 -5.8208 19 6 -3.5532 -7.7510 -5.1322 20 16 -3.2153 -7.5925 -3.4134 21 6 2.1608 -3.7402 -0.0462 22 1 -0.4849 0.8401 -0.0004 23 1 0.4833 -2.5466 0.7730 24 1 -0.3213 -2.8307 -1.5255 25 1 1.3285 -2.4988 -2.2141 26 1 -1.1593 -5.2883 -2.0968 27 1 0.0848 -5.2474 -3.3691 28 1 0.5053 -7.6686 -3.0346 29 1 -0.7389 -7.7088 -1.7624 30 1 -0.2897 -7.4197 -5.4812 31 1 -2.3787 -7.7557 -6.8974 32 1 -4.5332 -7.8912 -5.5637 33 1 3.1449 -3.5476 -0.4734 34 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598042641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = 17.728516 kcal Electronic energy + Delta-G solvation = -16899.412372 eV Core-core repulsion = 14117.708713 eV Total energy + Delta-G solvation = -2781.703659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.43690 -38.04523 -37.01702 -33.53671 -32.68071 -29.73606 -28.28888 -25.64213 -25.10476 -24.29051 -22.38075 -20.15894 -19.30438 -18.11451 -17.29006 -16.75904 -16.11847 -15.51031 -15.28261 -15.04344 -14.57876 -13.98048 -13.28155 -13.13545 -12.89524 -12.60613 -12.19219 -12.10039 -11.98316 -11.77911 -11.58014 -11.23992 -11.02365 -10.98264 -10.78877 -10.69726 -10.43864 -9.63335 -9.30542 -9.00413 -8.68620 -8.59423 -8.55803 -7.85978 -6.19658 -4.25289 0.90931 1.55438 1.93246 2.65121 3.17720 3.22629 3.30508 3.33320 3.59372 4.32192 4.66745 4.94917 5.06400 5.11499 5.16900 5.24769 5.45321 5.48202 5.71641 5.83205 6.06172 6.08734 6.12677 6.21167 6.22565 6.27997 6.38464 6.42684 6.57575 6.65114 6.80619 7.53789 7.78022 8.15284 8.51167 8.74953 8.78080 9.41739 10.90042 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003711 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.351975 B = 7542.754318 C = 8063.326782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.104 3.896 11 N -0.640 5.640 12 C 0.524 3.476 13 O -0.570 6.570 14 C -0.128 4.128 15 C -0.033 4.033 16 C -0.163 4.163 17 C -0.146 4.146 18 C -0.132 4.132 19 C -0.222 4.222 20 S 0.096 5.904 21 C 0.103 3.897 22 H 0.264 0.736 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -11.587 -9.636 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.014 3.986 10 C -0.018 4.018 11 N -0.374 5.374 12 C 0.313 3.687 13 O -0.451 6.451 14 C -0.169 4.169 15 C -0.073 4.073 16 C -0.280 4.280 17 C -0.176 4.176 18 C -0.163 4.163 19 C -0.357 4.357 20 S 0.359 5.641 21 C -0.019 4.019 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.092 0.908 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.638 -12.162 -8.137 16.068 hybrid contribution 1.099 1.028 -1.549 2.160 sum -5.538 -11.134 -9.687 15.763 Atomic orbital electron populations 1.69948 1.06052 1.27128 1.49231 1.25019 0.94864 0.99364 0.94303 0.86541 0.79925 0.83025 0.78241 1.20528 1.21129 1.19709 1.20982 0.93066 0.89724 1.52071 0.91877 1.20499 0.94142 0.91423 0.92541 1.23778 0.99418 0.76467 1.02102 1.50576 1.40191 1.04955 1.41678 1.20210 0.83782 0.81942 0.82721 1.90629 1.57103 1.39613 1.57740 1.21569 0.99260 0.96939 0.99126 1.19887 0.95639 0.95669 0.96075 1.24619 0.97242 1.07913 0.98254 1.20155 1.00203 1.04873 0.92336 1.20161 0.91614 1.03377 1.01106 1.25592 1.02597 1.11212 0.96346 1.84387 1.01831 1.71510 1.06341 1.23475 0.93871 0.93772 0.90807 0.92636 0.91859 0.91708 0.90644 0.89064 0.89012 0.89246 0.90010 0.84278 0.84473 0.82115 0.90849 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.52 -13.15 8.77 -34.44 -0.30 -13.45 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.03 0.77 3.60 -90.84 -0.33 0.44 16 10 C 0.10 2.17 8.19 -2.77 -0.02 2.15 16 11 N -0.64 -12.96 3.62 -178.12 -0.64 -13.60 16 12 C 0.52 10.06 8.06 -10.99 -0.09 9.97 16 13 O -0.57 -12.45 16.71 5.55 0.09 -12.36 16 14 C -0.13 -1.91 5.43 -27.88 -0.15 -2.06 16 15 C -0.03 -0.44 5.00 -27.88 -0.14 -0.58 16 16 C -0.16 -1.98 5.76 -36.01 -0.21 -2.19 16 17 C -0.15 -1.62 10.05 -41.21 -0.41 -2.03 16 18 C -0.13 -1.31 10.18 -41.21 -0.42 -1.73 16 19 C -0.22 -2.18 11.23 29.04 0.33 -1.86 16 20 S 0.10 1.08 23.33 -107.50 -2.51 -1.43 16 21 C 0.10 2.14 8.39 -2.96 -0.02 2.11 16 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 23 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 29 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -28.45 311.31 -9.13 -37.58 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.61 Total: 0.92 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.87 Total: -7.58 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.09 Total: -36.73 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.51 Total: -1.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.45 -9.13 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598042641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.307 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds