Wall clock time and date at job start Mon Mar 30 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47199 * 269.99589 * 3 2 1 5 5 H 1.48497 * 109.47283 * 29.99624 * 3 2 1 6 6 H 1.48499 * 109.47112 * 149.99748 * 3 2 1 7 7 C 1.37878 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00064 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.53950 * 113.74161 * 81.25908 * 9 7 2 11 11 N 1.47925 * 85.99684 * 138.00415 * 10 9 7 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.53003 * 109.47295 * 180.02562 * 14 12 11 16 16 C 1.50693 * 109.47295 * 179.97438 * 15 14 12 17 17 C 1.33391 * 125.20645 * 89.99562 * 16 15 14 18 18 C 1.38421 * 114.92301 * 179.97438 * 17 16 15 19 19 C 1.33395 * 114.92292 * 0.02562 * 18 17 16 20 20 S 1.75888 * 125.20153 * 269.69138 * 16 15 14 21 21 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 22 22 H 0.96999 * 119.99516 * 0.02562 * 1 2 3 23 23 H 1.09002 * 112.94317 * 309.66485 * 9 7 2 24 24 H 1.09006 * 113.76402 * 252.36573 * 10 9 7 25 25 H 1.08997 * 113.76968 * 23.75198 * 10 9 7 26 26 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 27 27 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 28 28 H 1.09003 * 109.46810 * 300.00156 * 15 14 12 29 29 H 1.09001 * 109.47213 * 59.99586 * 15 14 12 30 30 H 1.07999 * 122.53698 * 359.96174 * 17 16 15 31 31 H 1.07993 * 122.54279 * 180.02562 * 18 17 16 32 32 H 1.07997 * 125.20503 * 180.02562 * 19 18 17 33 33 H 1.09003 * 113.77049 * 270.34039 * 21 11 10 34 34 H 1.08993 * 113.77081 * 138.93800 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.7561 -2.9292 -1.3924 11 7 1.1904 -4.2911 -1.0121 12 6 0.8406 -5.5354 -1.3942 13 8 1.3838 -6.4981 -0.8953 14 6 -0.2246 -5.7303 -2.4422 15 6 -0.4292 -7.2263 -2.6894 16 6 -1.4949 -7.4212 -3.7369 17 6 -1.2772 -7.4959 -5.0508 18 6 -2.4130 -7.6782 -5.8208 19 6 -3.5532 -7.7510 -5.1322 20 16 -3.2153 -7.5925 -3.4134 21 6 2.1608 -3.7402 -0.0462 22 1 -0.4849 0.8401 -0.0004 23 1 0.4833 -2.5466 0.7730 24 1 -0.3213 -2.8307 -1.5255 25 1 1.3285 -2.4988 -2.2141 26 1 -1.1593 -5.2883 -2.0968 27 1 0.0848 -5.2474 -3.3691 28 1 0.5053 -7.6686 -3.0346 29 1 -0.7389 -7.7088 -1.7624 30 1 -0.2897 -7.4197 -5.4812 31 1 -2.3787 -7.7557 -6.8974 32 1 -4.5332 -7.8912 -5.5637 33 1 3.1449 -3.5476 -0.4734 34 1 2.2040 -4.2889 0.8945 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598042641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:42 Heat of formation + Delta-G solvation = 3.056357 kcal Electronic energy + Delta-G solvation = -16900.048604 eV Core-core repulsion = 14117.708713 eV Total energy + Delta-G solvation = -2782.339891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04428 -39.07456 -38.50186 -34.67844 -34.59394 -31.25648 -29.51404 -27.19636 -26.84524 -25.51113 -23.41306 -21.85825 -20.12147 -19.70592 -18.77130 -18.24796 -17.47563 -16.85562 -16.66027 -16.33149 -16.24712 -15.51742 -14.45312 -14.33322 -14.22268 -13.85980 -13.59093 -13.32418 -13.22361 -13.08848 -12.97016 -12.89716 -12.75262 -12.53375 -12.23794 -12.03366 -11.59547 -11.38783 -11.13597 -10.72696 -10.51086 -9.57838 -9.52781 -9.39952 -8.15673 -6.26806 0.08045 0.72001 1.12655 1.47687 1.50234 1.59136 1.63648 1.83121 2.05342 2.47047 3.15645 3.43156 3.96062 4.02566 4.06260 4.27694 4.32207 4.43337 4.48767 4.58230 4.63976 4.67410 4.72469 4.85812 4.88508 4.97571 5.02723 5.11179 5.25504 5.40990 5.60850 5.61700 5.82462 6.23356 6.80849 6.90244 7.16249 7.43380 8.94048 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003711 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.351975 B = 7542.754318 C = 8063.326782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.120 3.880 11 N -0.643 5.643 12 C 0.521 3.479 13 O -0.597 6.597 14 C -0.118 4.118 15 C -0.024 4.024 16 C -0.186 4.186 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.213 4.213 20 S 0.073 5.927 21 C 0.107 3.893 22 H 0.265 0.735 23 H 0.035 0.965 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.083 0.917 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -11.606 -11.446 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.002 4.002 11 N -0.376 5.376 12 C 0.312 3.688 13 O -0.480 6.480 14 C -0.158 4.158 15 C -0.063 4.063 16 C -0.303 4.303 17 C -0.172 4.172 18 C -0.170 4.170 19 C -0.348 4.348 20 S 0.336 5.664 21 C -0.015 4.015 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.204 0.796 33 H 0.102 0.898 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.707 -12.191 -9.952 17.107 hybrid contribution 1.103 0.971 -0.987 1.770 sum -5.604 -11.220 -10.940 16.642 Atomic orbital electron populations 1.70050 1.07337 1.27826 1.50362 1.25726 0.95557 1.02413 0.94087 0.85571 0.78678 0.79135 0.78368 1.19841 1.21299 1.19269 1.21279 0.93342 0.90707 1.51667 0.91701 1.20420 0.94177 0.91949 0.93286 1.23520 0.99492 0.76532 1.00635 1.50572 1.40114 1.05284 1.41669 1.20942 0.84024 0.80906 0.82904 1.90613 1.58264 1.40242 1.58897 1.21559 0.97678 0.98385 0.98143 1.19711 0.96154 0.94320 0.96132 1.24464 0.97169 1.10275 0.98358 1.20450 1.01343 1.03339 0.92023 1.20454 0.91051 1.03123 1.02421 1.25950 1.03879 1.09894 0.95063 1.84467 1.01669 1.72007 1.08253 1.23366 0.94091 0.92722 0.91336 0.92652 0.94725 0.91537 0.90022 0.88563 0.87311 0.89464 0.91251 0.83073 0.81911 0.79625 0.89848 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 13.29 21.45 0.28 -49.30 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.96 40.46 29.54 68.60 2.03 42.48 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.53 -26.80 8.77 25.60 0.22 -26.57 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.98 3.60 -10.88 -0.04 0.94 16 10 C 0.12 4.95 8.19 86.42 0.71 5.66 16 11 N -0.64 -25.72 3.62 -835.83 -3.02 -28.74 16 12 C 0.52 19.72 8.06 87.65 0.71 20.42 16 13 O -0.60 -26.02 16.71 -3.04 -0.05 -26.07 16 14 C -0.12 -3.37 5.43 29.85 0.16 -3.21 16 15 C -0.02 -0.62 5.00 29.85 0.15 -0.47 16 16 C -0.19 -4.27 5.76 24.59 0.14 -4.13 16 17 C -0.14 -2.81 10.05 21.22 0.21 -2.60 16 18 C -0.14 -2.38 10.18 21.22 0.22 -2.17 16 19 C -0.21 -3.62 11.23 66.72 0.75 -2.87 16 20 S 0.07 1.55 23.33 -56.49 -1.32 0.24 16 21 C 0.11 4.45 8.39 86.49 0.73 5.17 16 22 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 23 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 25 H 0.08 3.27 8.09 -2.39 -0.02 3.25 16 26 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 29 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.08 3.29 8.09 -2.39 -0.02 3.27 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -59.67 311.31 3.42 -56.25 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.08 Total: 13.36 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.42 Total: -8.22 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.74 Total: -78.04 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.32 Total: 0.24 kcal Total: -59.67 3.42 -56.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598042641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.307 kcal (2) G-P(sol) polarization free energy of solvation -59.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds