Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48508 * 109.46982 * 270.00099 * 3 2 1 5 5 H 1.48498 * 109.47191 * 29.99945 * 3 2 1 6 6 H 1.48501 * 109.47436 * 150.00270 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00020 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00060 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46915 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46915 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00004 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99961 * 179.97438 * 13 11 10 15 15 H 1.09002 * 115.54799 * 9.33942 * 14 13 11 16 16 C 1.52998 * 117.51943 * 223.62747 * 14 13 11 17 17 C 1.52998 * 60.00171 * 252.52382 * 16 14 13 18 18 H 1.09001 * 117.51583 * 107.48146 * 17 16 14 19 19 C 1.50697 * 117.49856 * 252.50994 * 17 16 14 20 20 C 1.38421 * 122.53935 * 188.62123 * 19 17 16 21 21 C 1.33388 * 114.92066 * 179.72463 * 20 19 17 22 22 S 1.75885 * 109.59458 * 0.27968 * 21 20 19 23 23 C 1.33395 * 122.53872 * 8.88183 * 19 17 16 24 24 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47195 * 59.99816 * 9 7 2 26 26 H 1.09001 * 109.47034 * 299.99868 * 9 7 2 27 27 H 1.08998 * 109.47385 * 60.00377 * 10 9 7 28 28 H 1.09001 * 109.47034 * 299.99712 * 10 9 7 29 29 H 0.96995 * 120.00291 * 0.02562 * 13 11 10 30 30 H 1.09001 * 117.49617 * 145.03232 * 16 14 13 31 31 H 1.09000 * 117.49731 * 0.02562 * 16 14 13 32 32 H 1.08002 * 122.54201 * 0.02562 * 20 19 17 33 33 H 1.08005 * 125.20509 * 180.28882 * 21 20 19 34 34 H 1.07998 * 125.20353 * 359.97100 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 8 0.2790 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 0.0009 15 1 0.3575 -7.3251 -0.1575 16 6 1.9312 -8.5062 0.9368 17 6 2.1445 -8.6301 -0.5731 18 1 3.1575 -8.4933 -0.9515 19 6 1.3044 -9.6382 -1.3141 20 6 1.5278 -9.9619 -2.6412 21 6 0.6977 -10.8770 -3.1440 22 16 -0.4484 -11.3767 -1.9070 23 6 0.2861 -10.2826 -0.7421 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 3.1356 -6.1345 -0.0006 30 1 1.1833 -9.1538 1.3943 31 1 2.8039 -8.2879 1.5523 32 1 2.3176 -9.5114 -3.2241 33 1 0.7253 -11.2536 -4.1559 34 1 -0.0353 -10.1553 0.2811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600446897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = 9.598097 kcal Electronic energy + Delta-G solvation = -16579.558870 eV Core-core repulsion = 13797.502650 eV Total energy + Delta-G solvation = -2782.056220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79222 -38.58537 -36.23989 -33.45097 -32.66746 -30.84374 -29.26004 -25.86759 -25.27442 -22.64478 -21.62757 -21.00262 -19.86443 -18.68778 -18.04402 -16.88973 -16.16259 -15.87221 -15.32342 -14.82736 -14.43787 -13.87596 -13.53155 -13.36945 -12.91926 -12.88120 -12.50828 -12.34732 -12.15230 -11.92487 -11.24959 -11.16756 -10.97927 -10.92097 -10.70557 -10.57685 -9.96100 -9.67336 -9.21651 -9.08291 -8.98973 -8.79861 -8.33020 -8.25982 -5.95829 -4.00339 0.79825 1.46499 1.78427 2.39808 3.14228 3.33563 3.37258 3.40526 3.43491 3.93331 4.47429 4.52290 4.68678 4.81993 4.87195 5.02412 5.17158 5.35848 5.39085 5.47075 5.61136 5.66386 5.92868 6.00186 6.16853 6.21342 6.22831 6.29531 6.71364 6.88197 7.74395 7.83968 7.86169 8.07312 8.38455 8.74384 9.08169 9.63178 11.15133 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.043776 B = 0.002952 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.460714 B = 9483.537181 C = 9625.626386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.531 6.531 13 N -0.716 5.716 14 C 0.105 3.895 15 H 0.137 0.863 16 C -0.186 4.186 17 C -0.111 4.111 18 H 0.116 0.884 19 C -0.064 4.064 20 C -0.125 4.125 21 C -0.213 4.213 22 S 0.090 5.910 23 C -0.213 4.213 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.399 0.601 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -23.687 -2.652 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.405 6.405 13 N -0.367 5.367 14 C -0.002 4.002 15 H 0.154 0.846 16 C -0.225 4.225 17 C -0.133 4.133 18 H 0.134 0.866 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.348 4.348 22 S 0.353 5.647 23 C -0.348 4.348 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.233 0.767 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.857 -24.558 -2.622 24.862 hybrid contribution 2.152 1.788 -0.101 2.800 sum 5.010 -22.770 -2.723 23.473 Atomic orbital electron populations 1.70001 1.06055 1.26592 1.50160 1.25031 0.94834 0.99244 0.95308 0.86585 0.79759 0.83498 0.78063 1.20674 1.21216 1.19893 1.21219 0.92926 0.91001 1.51426 0.92594 1.18908 0.93180 0.89343 0.98681 1.21880 1.00756 0.91682 1.02592 1.21633 0.88715 0.85438 0.73966 1.90669 1.14505 1.87481 1.47875 1.45682 1.09616 1.04451 1.76970 1.21712 0.97541 0.79723 1.01249 0.84575 1.23598 1.04233 1.02863 0.91818 1.21221 0.99518 0.97564 0.95002 0.86608 1.18160 0.96981 0.98626 0.93894 1.20036 1.01604 0.99088 0.94794 1.25581 1.01144 1.04627 1.03438 1.84255 1.34795 1.42484 1.03131 1.25448 1.01899 1.03666 1.03829 0.92939 0.95779 0.95777 0.90112 0.90113 0.76686 0.88056 0.87980 0.84127 0.81849 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 11 C 0.51 9.86 7.83 -10.99 -0.09 9.77 16 12 O -0.53 -12.59 15.55 5.56 0.09 -12.51 16 13 N -0.72 -9.96 5.57 -53.80 -0.30 -10.26 16 14 C 0.11 1.34 6.09 -67.93 -0.41 0.93 16 15 H 0.14 2.07 7.40 -51.93 -0.38 1.69 16 16 C -0.19 -1.79 9.85 -26.73 -0.26 -2.05 16 17 C -0.11 -1.11 6.07 -91.77 -0.56 -1.66 16 18 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.06 -0.67 5.52 -106.25 -0.59 -1.26 16 20 C -0.12 -1.21 9.98 -41.21 -0.41 -1.62 16 21 C -0.21 -1.88 11.23 29.04 0.33 -1.56 16 22 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16 23 C -0.21 -2.11 10.39 29.04 0.30 -1.81 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.40 4.23 8.83 -40.82 -0.36 3.87 16 30 H 0.10 0.88 6.55 -51.93 -0.34 0.54 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.16 1.41 6.64 -52.49 -0.35 1.06 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -33.98 310.38 -9.06 -43.04 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.35 Total: 1.73 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -2.38 Total: -14.86 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.44 Total: -37.04 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.98 -9.06 -43.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600446897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.638 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds