Wall clock time and date at job start Mon Mar 30 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33822 * 124.52238 * 2 1 4 4 C 1.37468 * 115.09949 * 180.29255 * 3 2 1 5 5 C 1.50706 * 123.34777 * 179.72410 * 4 3 2 6 6 C 1.36651 * 113.30181 * 359.51195 * 4 3 2 7 7 C 1.46579 * 125.46209 * 180.19893 * 6 4 3 8 8 O 1.21697 * 119.99913 * 0.27401 * 7 6 4 9 9 N 1.34769 * 120.00167 * 180.27339 * 7 6 4 10 10 C 1.47071 * 136.05427 * 359.62726 * 9 7 6 11 11 C 1.53242 * 88.08330 * 207.20350 * 10 9 7 12 12 C 1.50699 * 114.32933 * 220.47274 * 11 10 9 13 13 H 1.08006 * 119.99885 * 93.75475 * 12 11 10 14 14 C 1.37879 * 120.00049 * 273.76204 * 12 11 10 15 15 N 1.31514 * 119.99827 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99799 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47024 * 90.00162 * 16 14 12 18 18 H 1.48501 * 109.46546 * 210.00114 * 16 14 12 19 19 H 1.48496 * 109.46804 * 329.99842 * 16 14 12 20 20 C 1.47068 * 136.05970 * 179.97438 * 9 7 6 21 21 S 1.70615 * 124.52683 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.47208 * 90.00196 * 1 2 3 23 23 H 1.09004 * 109.46354 * 210.00369 * 1 2 3 24 24 H 1.08999 * 109.47278 * 330.00227 * 1 2 3 25 25 H 1.08002 * 122.44530 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.46688 * 90.02785 * 5 4 3 27 27 H 1.09010 * 109.47000 * 210.02440 * 5 4 3 28 28 H 1.08996 * 109.47399 * 330.02481 * 5 4 3 29 29 H 1.08994 * 113.47252 * 321.93959 * 10 9 7 30 30 H 1.09001 * 113.46468 * 92.37925 * 10 9 7 31 31 H 1.09002 * 114.01679 * 87.71854 * 11 10 9 32 32 H 0.97008 * 119.99731 * 179.97438 * 15 14 12 33 33 H 1.08993 * 113.46887 * 267.62275 * 20 9 7 34 34 H 1.09000 * 113.46998 * 38.06393 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1026 0.0000 4 6 3.6215 0.8775 -0.0064 5 6 4.6449 1.9838 -0.0135 6 6 3.9494 -0.4491 -0.0009 7 6 5.3124 -0.9882 -0.0014 8 8 6.2659 -0.2320 -0.0020 9 7 5.5097 -2.3214 -0.0012 10 6 4.6552 -3.5184 0.0062 11 6 5.7984 -4.2673 0.6993 12 6 6.0064 -5.6762 0.2065 13 1 6.7242 -5.8741 -0.5759 14 6 5.2804 -6.7124 0.7543 15 7 5.4616 -7.9418 0.3238 16 14 4.0393 -6.3701 2.1078 17 1 2.7124 -6.0893 1.5033 18 1 3.9375 -7.5550 2.9971 19 1 4.4818 -5.1940 2.8991 20 6 6.6743 -3.2195 -0.0020 21 16 2.4740 -1.4056 -0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.8429 2.0965 0.0004 26 1 4.8971 2.2520 1.0124 27 1 5.5423 1.6453 -0.5316 28 1 4.2356 2.8541 -0.5265 29 1 3.7666 -3.4135 0.6285 30 1 4.4299 -3.8969 -0.9909 31 1 5.7873 -4.1859 1.7862 32 1 4.9511 -8.6710 0.7094 33 1 6.9918 -3.5178 -1.0011 34 1 7.4994 -2.8611 0.6136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:56 Heat of formation + Delta-G solvation = 8.148346 kcal Electronic energy + Delta-G solvation = -17585.338955 eV Core-core repulsion = 14803.219869 eV Total energy + Delta-G solvation = -2782.119086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.34506 -39.75012 -38.34139 -34.70175 -33.63152 -31.77973 -29.40566 -28.56090 -26.90634 -26.64186 -23.01133 -22.56478 -20.91866 -19.32368 -19.13984 -18.72160 -17.09021 -16.86169 -16.64786 -16.01010 -15.47226 -15.22575 -14.88372 -14.73600 -14.20404 -14.01051 -13.99639 -13.72178 -13.53879 -13.50377 -12.88990 -12.78731 -12.61799 -12.55045 -12.48570 -11.85131 -11.76295 -11.59156 -11.21453 -10.88333 -10.67195 -9.89198 -9.56224 -9.38421 -8.29200 -6.37274 -0.51557 0.47633 0.94664 1.34366 1.38896 1.42402 1.50484 1.81771 2.11434 2.36302 2.99813 3.45892 3.77375 3.93375 4.18930 4.19629 4.22793 4.40387 4.51826 4.52382 4.59885 4.65834 4.70642 4.72034 4.77077 4.84957 4.99709 5.06320 5.17253 5.32025 5.40670 5.51707 5.56826 6.26240 6.67316 6.72377 7.00890 7.30207 8.86032 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.006390 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.891244 B = 4380.486969 C = 5344.414548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.187 4.187 3 C -0.164 4.164 4 C -0.018 4.018 5 C -0.101 4.101 6 C -0.308 4.308 7 C 0.604 3.396 8 O -0.574 6.574 9 N -0.646 5.646 10 C 0.093 3.907 11 C -0.014 4.014 12 C -0.511 4.511 13 H 0.046 0.954 14 C 0.027 3.973 15 N -0.939 5.939 16 Si 0.926 3.074 17 H -0.254 1.254 18 H -0.286 1.286 19 H -0.247 1.247 20 C 0.120 3.880 21 S 0.195 5.805 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.173 0.827 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.083 0.917 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 17.146 0.667 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.307 4.307 3 C -0.193 4.193 4 C -0.034 4.034 5 C -0.159 4.159 6 C -0.428 4.428 7 C 0.397 3.603 8 O -0.458 6.458 9 N -0.379 5.379 10 C -0.030 4.030 11 C -0.034 4.034 12 C -0.549 4.549 13 H 0.064 0.936 14 C -0.172 4.172 15 N -0.578 5.578 16 Si 0.749 3.251 17 H -0.178 1.178 18 H -0.212 1.212 19 H -0.171 1.171 20 C -0.002 4.002 21 S 0.464 5.536 22 H 0.111 0.889 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.190 0.810 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.496 15.991 0.675 20.306 hybrid contribution 0.241 0.936 0.322 1.019 sum -12.254 16.927 0.997 20.921 Atomic orbital electron populations 1.20556 0.84805 1.04721 1.04326 1.24885 1.03229 0.97541 1.05058 1.20030 0.90857 1.01013 1.07407 1.19824 0.96209 0.92760 0.94652 1.20701 0.96864 0.95199 1.03134 1.24214 0.96350 0.98473 1.23758 1.16854 0.87689 0.79872 0.75906 1.90692 1.43521 1.57229 1.54357 1.49761 1.13449 1.03215 1.71504 1.23693 0.96153 0.81249 1.01886 1.20754 0.93059 0.92874 0.96674 1.20871 1.23064 0.90086 1.20901 0.93552 1.25771 0.98482 0.94354 0.98594 1.70024 1.42785 1.00638 1.44364 0.86021 0.80408 0.78678 0.79962 1.17831 1.21199 1.17077 1.23031 0.90142 0.86075 1.00975 1.83490 0.93652 1.07734 1.68726 0.88943 0.90505 0.88276 0.80986 0.90473 0.91671 0.88808 0.91150 0.89163 0.91295 0.92181 0.89936 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.31 71.24 0.73 -0.37 16 2 C -0.19 -3.92 6.28 24.68 0.15 -3.76 16 3 C -0.16 -3.48 9.82 21.08 0.21 -3.27 16 4 C -0.02 -0.51 5.90 -20.42 -0.12 -0.63 16 5 C -0.10 -2.53 9.54 71.24 0.68 -1.85 16 6 C -0.31 -10.24 6.45 24.08 0.16 -10.09 16 7 C 0.60 24.11 8.03 86.42 0.69 24.81 16 8 O -0.57 -25.24 15.03 -4.34 -0.07 -25.31 16 9 N -0.65 -25.81 3.69 -863.59 -3.19 -29.00 16 10 C 0.09 3.64 6.33 83.10 0.53 4.17 16 11 C -0.01 -0.61 2.99 -11.28 -0.03 -0.65 16 12 C -0.51 -26.84 9.38 25.60 0.24 -26.60 16 13 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 14 C 0.03 1.47 5.47 84.66 0.46 1.93 16 15 N -0.94 -54.92 13.96 21.45 0.30 -54.62 16 16 Si 0.93 40.15 27.42 68.60 1.88 42.03 16 17 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.25 -10.06 6.21 99.48 0.62 -9.44 16 20 C 0.12 4.87 8.19 83.19 0.68 5.55 16 21 S 0.19 5.34 19.85 -56.49 -1.12 4.22 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 2.03 6.04 -2.38 -0.01 2.02 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.54 6.39 -2.39 -0.02 2.52 16 30 H 0.09 3.51 8.10 -2.39 -0.02 3.49 16 31 H 0.07 3.02 6.50 -2.39 -0.02 3.01 16 32 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 33 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -64.94 297.45 3.20 -61.74 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.01 Total: 11.70 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.38 Total: -10.76 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -2.89 Total: -83.62 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.07 Total: -25.31 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.88 Total: 42.03 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.12 Total: 4.22 kcal Total: -64.94 3.20 -61.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.884 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds