Wall clock time and date at job start Mon Mar 30 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 13 13 C 1.50695 * 109.47310 * 295.00134 * 12 2 1 14 14 N 1.30983 * 126.43130 * 89.70921 * 13 12 2 15 15 C 1.35238 * 105.57784 * 179.91787 * 14 13 12 16 16 C 1.48320 * 126.42086 * 180.12604 * 15 14 13 17 17 C 1.38849 * 122.85790 * 359.94961 * 16 15 14 18 18 N 1.29779 * 116.83075 * 179.73616 * 17 16 15 19 19 S 1.69533 * 107.50913 * 0.49048 * 18 17 16 20 20 C 1.36337 * 122.86004 * 180.23466 * 16 15 14 21 21 N 1.30833 * 107.15904 * 0.34931 * 15 14 13 22 22 O 1.21285 * 110.08244 * 359.78070 * 21 15 14 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46898 * 55.00584 * 12 2 1 28 28 H 1.09000 * 109.47017 * 174.99595 * 12 2 1 29 29 H 1.07995 * 121.58847 * 359.97438 * 17 16 15 30 30 H 1.07997 * 127.25932 * 0.02906 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0570 2.4765 14 7 0.5327 -0.0825 3.1600 15 6 0.6116 0.8161 4.1675 16 6 -0.4039 1.0463 5.2237 17 6 -1.5940 0.3344 5.2925 18 7 -2.3966 0.6279 6.2692 19 16 -1.6709 1.8667 7.1709 20 6 -0.2509 1.9789 6.2064 21 7 1.7495 1.4476 4.0332 22 8 2.3500 1.0233 3.0687 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7011 1.1560 -3.4844 27 1 1.6054 -1.7198 1.2950 28 1 3.1263 -0.7995 1.2055 29 1 -1.8385 -0.4300 4.5699 30 1 0.5853 2.6474 6.3489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687173226.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:09 Heat of formation + Delta-G solvation = 98.805303 kcal Electronic energy + Delta-G solvation = -16991.183789 eV Core-core repulsion = 14109.455540 eV Total energy + Delta-G solvation = -2881.728249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.18351 -39.12809 -35.93333 -35.03925 -32.91538 -31.48140 -30.35054 -26.72657 -25.95549 -25.19209 -23.81930 -22.01949 -20.45222 -19.50461 -18.43421 -17.77087 -16.74368 -16.30231 -15.92907 -14.69926 -14.46310 -14.27699 -14.07456 -13.59321 -13.13710 -12.74002 -12.37374 -11.83557 -11.70526 -11.60894 -11.28701 -11.01842 -10.91042 -10.68312 -10.66931 -10.34961 -10.21706 -9.94356 -9.85854 -9.35809 -8.97524 -8.68382 -8.44323 -6.09024 -4.17710 0.27624 1.15000 1.37625 1.55676 1.97813 2.97760 3.23143 3.25597 3.34282 3.37076 3.74193 4.12293 4.36787 4.49477 4.98991 5.22799 5.34632 5.36962 5.57299 5.87918 5.99803 6.13860 6.22938 6.37391 6.48927 6.87272 7.08035 7.20170 7.59851 7.80337 8.01904 8.26042 8.44059 8.84973 9.48298 10.97029 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045997 B = 0.003863 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.584750 B = 7245.590633 C = 7520.944214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 H 0.032 0.968 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.028 4.028 13 C 0.226 3.774 14 N -0.485 5.485 15 C 0.224 3.776 16 C -0.086 4.086 17 C 0.130 3.870 18 N -0.459 5.459 19 S 0.277 5.723 20 C -0.173 4.173 21 N -0.388 5.388 22 O 0.074 5.926 23 H 0.030 0.970 24 H 0.010 0.990 25 H 0.083 0.917 26 H 0.261 0.739 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.198 0.802 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 0.951 15.470 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.067 4.067 13 C 0.007 3.993 14 N -0.218 5.218 15 C -0.049 4.049 16 C -0.105 4.105 17 C -0.070 4.070 18 N -0.277 5.277 19 S 0.429 5.571 20 C -0.324 4.324 21 N -0.098 5.098 22 O 0.016 5.984 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.215 0.785 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.382 1.763 17.508 17.919 hybrid contribution 1.643 -0.702 -2.457 3.038 sum -1.740 1.061 15.052 15.189 Atomic orbital electron populations 1.21835 0.97830 0.99583 1.00348 1.18750 0.93515 0.95977 0.88800 0.94991 1.21058 1.31781 1.12835 0.89931 0.92022 1.24952 0.94837 0.94919 0.99127 1.69907 1.36215 1.22797 1.23509 0.86481 0.78629 0.79682 0.82875 1.19625 1.21002 1.20995 1.20909 1.02511 0.97499 0.85798 1.29531 0.85259 0.88159 0.96315 1.72066 1.20908 1.22964 1.05840 1.22991 0.92802 0.93440 0.95648 1.17677 0.95151 1.01135 0.96542 1.22877 0.89049 0.99104 0.95949 1.76748 1.26710 1.13620 1.10654 1.84031 1.06494 1.34245 1.32369 1.26816 1.05309 1.01596 0.98712 1.74819 1.08594 1.21290 1.05087 1.85262 1.41955 1.41412 1.29777 0.95055 0.97106 0.89866 0.92874 0.88086 0.88914 0.78539 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.78 37.16 0.33 -2.90 16 2 C 0.05 1.13 2.29 -91.77 -0.21 0.92 16 3 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.52 -13.06 8.56 -34.44 -0.29 -13.35 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.39 11.31 55.43 0.63 -23.76 16 8 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C -0.03 -0.51 5.25 -27.89 -0.15 -0.66 16 13 C 0.23 4.08 6.96 -12.98 -0.09 3.99 16 14 N -0.48 -8.71 10.79 -9.87 -0.11 -8.82 16 15 C 0.22 3.76 7.89 -156.09 -1.23 2.53 16 16 C -0.09 -1.19 5.83 -106.21 -0.62 -1.81 16 17 C 0.13 1.71 11.05 -18.19 -0.20 1.51 16 18 N -0.46 -5.90 12.05 29.18 0.35 -5.55 16 19 S 0.28 2.80 23.70 -107.50 -2.55 0.25 16 20 C -0.17 -1.95 11.17 30.05 0.34 -1.62 16 21 N -0.39 -6.74 12.09 30.98 0.37 -6.37 16 22 O 0.07 1.33 11.29 18.06 0.20 1.53 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.01 0.22 6.83 -51.93 -0.35 -0.13 16 25 H 0.08 2.17 6.06 -51.93 -0.31 1.86 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 30 H 0.19 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 282.81 15.07 4.26 4.26 Total: -1.00 -28.09 282.81 -6.83 -34.92 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.75 Total: -1.82 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.23 Total: -9.82 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 1.25 Total: -44.49 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.53 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.55 Total: 0.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.09 -6.83 -34.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173226.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.721 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds