Wall clock time and date at job start Mon Mar 30 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 13 13 C 1.50695 * 109.47310 * 295.00134 * 12 2 1 14 14 N 1.30983 * 126.43130 * 89.70921 * 13 12 2 15 15 C 1.35238 * 105.57784 * 179.91787 * 14 13 12 16 16 C 1.48320 * 126.42086 * 180.12604 * 15 14 13 17 17 C 1.38849 * 122.85790 * 359.94961 * 16 15 14 18 18 N 1.29779 * 116.83075 * 179.73616 * 17 16 15 19 19 S 1.69533 * 107.50913 * 0.49048 * 18 17 16 20 20 C 1.36337 * 122.86004 * 180.23466 * 16 15 14 21 21 N 1.30833 * 107.15904 * 0.34931 * 15 14 13 22 22 O 1.21285 * 110.08244 * 359.78070 * 21 15 14 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46898 * 55.00584 * 12 2 1 28 28 H 1.09000 * 109.47017 * 174.99595 * 12 2 1 29 29 H 1.07995 * 121.58847 * 359.97438 * 17 16 15 30 30 H 1.07997 * 127.25932 * 0.02906 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0570 2.4765 14 7 0.5327 -0.0825 3.1600 15 6 0.6116 0.8161 4.1675 16 6 -0.4039 1.0463 5.2237 17 6 -1.5940 0.3344 5.2925 18 7 -2.3966 0.6279 6.2692 19 16 -1.6709 1.8667 7.1709 20 6 -0.2509 1.9789 6.2064 21 7 1.7495 1.4476 4.0332 22 8 2.3500 1.0233 3.0687 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7011 1.1560 -3.4844 27 1 1.6054 -1.7198 1.2950 28 1 3.1263 -0.7995 1.2055 29 1 -1.8385 -0.4300 4.5699 30 1 0.5853 2.6474 6.3489 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687173226.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:08 Heat of formation + Delta-G solvation = 81.520636 kcal Electronic energy + Delta-G solvation = -16991.933308 eV Core-core repulsion = 14109.455540 eV Total energy + Delta-G solvation = -2882.477768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.52169 -40.10994 -37.53490 -36.48304 -34.47113 -32.91982 -31.72200 -28.32426 -27.26270 -26.92082 -25.09710 -23.39194 -21.91102 -20.79098 -19.51180 -19.15689 -18.33129 -17.80926 -17.03279 -16.55664 -15.84755 -15.44738 -15.18768 -14.80831 -14.59937 -14.29267 -13.91967 -13.44639 -13.07055 -12.95373 -12.80278 -12.62918 -12.43975 -12.20059 -12.07679 -11.91062 -11.73777 -11.70376 -11.12110 -10.88045 -10.67130 -10.43260 -9.68025 -8.06965 -6.21305 -0.69003 0.10065 0.25131 0.64360 0.76008 1.47833 1.50853 1.61180 1.77969 1.85954 2.47497 2.56510 2.87732 3.23582 3.55110 3.96956 4.08005 4.38271 4.44329 4.53215 4.59378 4.66966 4.84418 4.92196 5.08109 5.18570 5.35613 5.37014 5.64010 5.87482 6.07751 6.31301 6.90202 7.08468 7.48272 8.98892 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.045997 B = 0.003863 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.584750 B = 7245.590633 C = 7520.944214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.047 3.953 3 H 0.001 0.999 4 C -0.526 4.526 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.016 4.016 13 C 0.222 3.778 14 N -0.495 5.495 15 C 0.230 3.770 16 C -0.120 4.120 17 C 0.128 3.872 18 N -0.487 5.487 19 S 0.348 5.652 20 C -0.161 4.161 21 N -0.397 5.397 22 O 0.065 5.935 23 H 0.035 0.965 24 H 0.016 0.984 25 H 0.051 0.949 26 H 0.259 0.741 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.196 0.804 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 0.510 16.797 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.027 3.973 3 H 0.020 0.980 4 C -0.564 4.564 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.182 1.182 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.055 4.055 13 C 0.002 3.998 14 N -0.229 5.229 15 C -0.043 4.043 16 C -0.140 4.140 17 C -0.070 4.070 18 N -0.307 5.307 19 S 0.500 5.500 20 C -0.312 4.312 21 N -0.109 5.109 22 O 0.010 5.990 23 H 0.054 0.946 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.213 0.787 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.088 1.308 18.836 19.132 hybrid contribution 1.486 -0.466 -2.696 3.114 sum -1.602 0.842 16.140 16.241 Atomic orbital electron populations 1.21652 0.98250 0.99343 0.99017 1.18633 0.93131 0.94753 0.90756 0.98034 1.21488 1.31268 1.12950 0.90689 0.90873 1.25759 0.95172 0.95615 1.02186 1.70055 1.37694 1.24392 1.23895 0.85500 0.77967 0.78835 0.79303 1.18206 1.21258 1.21181 1.20678 1.03793 0.97284 0.83752 1.29413 0.85512 0.88340 0.96486 1.72060 1.20840 1.23613 1.06371 1.23417 0.92944 0.92399 0.95563 1.17760 0.95403 1.03406 0.97409 1.22790 0.88879 0.99199 0.96159 1.76607 1.27623 1.15242 1.11182 1.83837 1.04386 1.31781 1.29968 1.27175 1.06218 1.00242 0.97614 1.74791 1.09060 1.21771 1.05291 1.85242 1.42222 1.41464 1.30107 0.94590 0.96544 0.92963 0.93141 0.86738 0.86810 0.78729 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.78 71.98 0.63 -5.26 16 2 C 0.05 2.17 2.29 -11.54 -0.03 2.14 16 3 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 4 C -0.53 -26.27 8.56 25.60 0.22 -26.05 16 5 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -51.66 11.31 21.45 0.24 -51.42 16 8 Si 0.96 41.23 29.54 68.60 2.03 43.26 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 12 C -0.02 -0.58 5.25 29.85 0.16 -0.42 16 13 C 0.22 7.88 6.96 88.35 0.62 8.49 16 14 N -0.50 -17.54 10.79 -302.41 -3.26 -20.81 16 15 C 0.23 7.54 7.89 137.24 1.08 8.62 16 16 C -0.12 -3.20 5.83 -20.89 -0.12 -3.32 16 17 C 0.13 3.25 11.05 85.14 0.94 4.19 16 18 N -0.49 -11.73 12.05 -61.60 -0.74 -12.47 16 19 S 0.35 6.09 23.70 -56.49 -1.34 4.75 16 20 C -0.16 -3.26 11.17 67.38 0.75 -2.51 16 21 N -0.40 -13.53 12.09 -59.03 -0.71 -14.24 16 22 O 0.07 2.31 11.29 74.67 0.84 3.15 16 23 H 0.03 1.60 8.14 -2.38 -0.02 1.59 16 24 H 0.02 0.71 6.83 -2.39 -0.02 0.69 16 25 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 26 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 27 H 0.11 3.76 8.14 -2.38 -0.02 3.74 16 28 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.20 4.79 8.06 -2.91 -0.02 4.76 16 30 H 0.21 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -59.71 282.81 2.92 -56.79 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.17 Total: 4.05 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.70 Total: -13.07 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.48 Total: -98.94 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.84 Total: 3.15 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.34 Total: 4.75 kcal Total: -59.71 2.92 -56.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173226.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.308 kcal (2) G-P(sol) polarization free energy of solvation -59.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds