Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47042 * 2 1 4 4 C 1.50704 * 109.47377 * 119.99819 * 2 1 3 5 5 H 1.07996 * 120.00002 * 120.00089 * 4 2 1 6 6 C 1.37882 * 119.99859 * 300.00379 * 4 2 1 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99648 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47041 * 60.00038 * 8 6 4 10 10 H 1.48503 * 109.47065 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47379 * 299.99515 * 8 6 4 12 12 C 1.52993 * 109.47420 * 240.00021 * 2 1 3 13 13 C 1.50699 * 109.47196 * 64.99514 * 12 2 1 14 14 N 1.30979 * 126.42948 * 90.32400 * 13 12 2 15 15 C 1.35243 * 105.58068 * 180.12196 * 14 13 12 16 16 C 1.48307 * 126.42214 * 179.84690 * 15 14 13 17 17 C 1.38851 * 122.86315 * 179.71546 * 16 15 14 18 18 N 1.29784 * 116.83627 * 179.97438 * 17 16 15 19 19 S 1.69535 * 107.50505 * 0.02562 * 18 17 16 20 20 C 1.36334 * 122.86341 * 359.68815 * 16 15 14 21 21 N 1.30836 * 107.15523 * 359.58524 * 15 14 13 22 22 O 1.21291 * 110.08753 * 0.26064 * 21 15 14 23 23 H 1.09010 * 109.47009 * 299.99708 * 1 2 3 24 24 H 1.08993 * 109.47660 * 60.00045 * 1 2 3 25 25 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99487 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46828 * 304.99935 * 12 2 1 28 28 H 1.08993 * 109.47831 * 185.00107 * 12 2 1 29 29 H 1.08006 * 121.58257 * 0.02562 * 17 16 15 30 30 H 1.08005 * 127.25653 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8065 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2205 11 1 1.8259 -2.5201 4.0078 12 6 2.0400 -0.7212 -1.2492 13 6 1.6413 0.0570 -2.4765 14 7 2.3386 0.9996 -3.0604 15 6 1.5905 1.4071 -4.1108 16 6 1.9456 2.4659 -5.0867 17 6 1.1208 2.8222 -6.1453 18 7 1.5470 3.7652 -6.9286 19 16 3.0599 4.2646 -6.3489 20 6 3.1095 3.1727 -5.0206 21 7 0.4973 0.6883 -4.1080 22 8 0.5125 -0.0895 -3.1774 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1618 3.4844 27 1 1.6054 -1.7198 -1.2950 28 1 3.1263 -0.7995 -1.2056 29 1 0.1692 2.3381 -6.3087 30 1 3.8970 3.0687 -4.2887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687173230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = 97.439544 kcal Electronic energy + Delta-G solvation = -16955.004847 eV Core-core repulsion = 14073.217375 eV Total energy + Delta-G solvation = -2881.787472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.17523 -39.13678 -35.87260 -35.15100 -32.78255 -31.40172 -30.60930 -26.78042 -25.88913 -25.22080 -23.39282 -22.54512 -20.32178 -19.73103 -17.98171 -17.73289 -17.20587 -16.32161 -15.77027 -14.69322 -14.47607 -14.22448 -13.93464 -13.54849 -13.40664 -12.88394 -12.14472 -11.83279 -11.71954 -11.64550 -11.30633 -10.99662 -10.88905 -10.81583 -10.68989 -10.42936 -10.24567 -9.96190 -9.83374 -9.36124 -9.02611 -8.68201 -8.44818 -6.09785 -4.18639 0.29983 1.16404 1.36450 1.54260 1.96401 2.97373 3.24283 3.27073 3.32611 3.34797 3.70449 4.20547 4.35763 4.51029 4.94769 5.21879 5.22734 5.49146 5.60280 5.88492 5.95945 6.12175 6.24445 6.31601 6.47142 6.77914 6.98093 7.15009 7.58021 7.78890 7.98650 8.24102 8.44667 8.83662 9.47301 10.96364 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.003911 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.055784 B = 7157.630477 C = 7471.435000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.035 0.965 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.028 4.028 13 C 0.227 3.773 14 N -0.490 5.490 15 C 0.225 3.775 16 C -0.093 4.093 17 C 0.121 3.879 18 N -0.462 5.462 19 S 0.281 5.719 20 C -0.157 4.157 21 N -0.389 5.389 22 O 0.077 5.923 23 H 0.086 0.914 24 H 0.004 0.996 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.191 0.809 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 2.717 -13.749 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.031 3.969 3 H 0.053 0.947 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.067 4.067 13 C 0.008 3.992 14 N -0.223 5.223 15 C -0.048 4.048 16 C -0.112 4.112 17 C -0.078 4.078 18 N -0.280 5.280 19 S 0.433 5.567 20 C -0.308 4.308 21 N -0.098 5.098 22 O 0.019 5.981 23 H 0.105 0.895 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.208 0.792 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.292 4.758 -15.799 16.825 hybrid contribution -0.280 -1.873 2.320 2.995 sum 3.012 2.885 -13.479 14.109 Atomic orbital electron populations 1.21897 0.98148 0.99579 1.00330 1.18745 0.93124 0.96254 0.88807 0.94702 1.20974 1.32037 1.12793 0.89947 0.92116 1.24947 0.94835 0.94889 0.99100 1.69880 1.36172 1.22660 1.23757 0.86591 0.79229 0.79734 0.82062 1.20157 1.21291 1.20132 1.20908 1.02587 0.97479 0.85753 1.29511 0.80918 0.93164 0.95617 1.72022 1.29800 1.13045 1.07454 1.22962 0.88742 0.97977 0.95077 1.17657 0.96097 0.99835 0.97624 1.22781 1.01214 0.93693 0.90149 1.76700 1.07617 1.17208 1.26517 1.84056 1.18892 1.36677 1.17069 1.26907 1.01102 0.98898 1.03872 1.74823 1.21294 1.06082 1.07626 1.85283 1.38757 1.45108 1.28995 0.89502 0.97704 0.94821 0.92735 0.88979 0.88051 0.79200 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.78 37.16 0.33 -2.92 16 2 C 0.05 1.16 2.29 -91.77 -0.21 0.95 16 3 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.52 -13.09 8.56 -34.44 -0.29 -13.38 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 C -0.03 -0.52 5.26 -27.89 -0.15 -0.66 16 13 C 0.23 4.14 6.90 -12.98 -0.09 4.05 16 14 N -0.49 -8.95 11.48 -9.86 -0.11 -9.07 16 15 C 0.23 3.82 7.89 -156.09 -1.23 2.59 16 16 C -0.09 -1.30 5.82 -106.21 -0.62 -1.92 16 17 C 0.12 1.54 11.03 -18.19 -0.20 1.34 16 18 N -0.46 -5.81 12.05 29.18 0.35 -5.46 16 19 S 0.28 2.89 23.70 -107.50 -2.55 0.34 16 20 C -0.16 -1.85 11.18 30.05 0.34 -1.51 16 21 N -0.39 -6.81 12.10 30.99 0.37 -6.43 16 22 O 0.08 1.39 10.73 18.03 0.19 1.58 16 23 H 0.09 2.23 6.07 -51.92 -0.32 1.92 16 24 H 0.00 0.09 6.93 -51.93 -0.36 -0.27 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.19 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.20 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 283.01 15.07 4.26 4.26 Total: -1.00 -28.08 283.01 -6.85 -34.92 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.75 Total: -1.68 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.22 Total: -9.88 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.24 Total: -44.66 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.55 Total: 0.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.08 -6.85 -34.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.363 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds