Wall clock time and date at job start Mon Mar 30 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47042 * 2 1 4 4 C 1.50704 * 109.47377 * 119.99819 * 2 1 3 5 5 H 1.07996 * 120.00002 * 120.00089 * 4 2 1 6 6 C 1.37882 * 119.99859 * 300.00379 * 4 2 1 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99648 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47041 * 60.00038 * 8 6 4 10 10 H 1.48503 * 109.47065 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47379 * 299.99515 * 8 6 4 12 12 C 1.52993 * 109.47420 * 240.00021 * 2 1 3 13 13 C 1.50699 * 109.47196 * 64.99514 * 12 2 1 14 14 N 1.30979 * 126.42948 * 90.32400 * 13 12 2 15 15 C 1.35243 * 105.58068 * 180.12196 * 14 13 12 16 16 C 1.48307 * 126.42214 * 179.84690 * 15 14 13 17 17 C 1.38851 * 122.86315 * 179.71546 * 16 15 14 18 18 N 1.29784 * 116.83627 * 179.97438 * 17 16 15 19 19 S 1.69535 * 107.50505 * 0.02562 * 18 17 16 20 20 C 1.36334 * 122.86341 * 359.68815 * 16 15 14 21 21 N 1.30836 * 107.15523 * 359.58524 * 15 14 13 22 22 O 1.21291 * 110.08753 * 0.26064 * 21 15 14 23 23 H 1.09010 * 109.47009 * 299.99708 * 1 2 3 24 24 H 1.08993 * 109.47660 * 60.00045 * 1 2 3 25 25 H 1.09003 * 109.47085 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99487 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46828 * 304.99935 * 12 2 1 28 28 H 1.08993 * 109.47831 * 185.00107 * 12 2 1 29 29 H 1.08006 * 121.58257 * 0.02562 * 17 16 15 30 30 H 1.08005 * 127.25653 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8065 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2205 11 1 1.8259 -2.5201 4.0078 12 6 2.0400 -0.7212 -1.2492 13 6 1.6413 0.0570 -2.4765 14 7 2.3386 0.9996 -3.0604 15 6 1.5905 1.4071 -4.1108 16 6 1.9456 2.4659 -5.0867 17 6 1.1208 2.8222 -6.1453 18 7 1.5470 3.7652 -6.9286 19 16 3.0599 4.2646 -6.3489 20 6 3.1095 3.1727 -5.0206 21 7 0.4973 0.6883 -4.1080 22 8 0.5125 -0.0895 -3.1774 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7095 1.1618 3.4844 27 1 1.6054 -1.7198 -1.2950 28 1 3.1263 -0.7995 -1.2056 29 1 0.1692 2.3381 -6.3087 30 1 3.8970 3.0687 -4.2887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687173230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:10 Heat of formation + Delta-G solvation = 79.943974 kcal Electronic energy + Delta-G solvation = -16955.763512 eV Core-core repulsion = 14073.217375 eV Total energy + Delta-G solvation = -2882.546137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.53174 -40.11955 -37.47798 -36.60305 -34.39596 -32.75027 -32.00816 -28.36717 -27.29610 -26.88834 -24.58539 -23.95347 -21.84193 -20.98535 -19.24755 -18.96584 -18.46300 -18.17203 -16.86778 -16.55235 -15.63258 -15.46147 -15.26832 -14.88186 -14.67289 -14.49571 -13.57311 -13.49967 -13.09827 -13.04878 -12.76178 -12.60708 -12.54751 -12.16437 -12.14464 -11.94197 -11.79066 -11.69678 -11.11129 -10.92731 -10.66655 -10.42004 -9.69296 -8.06923 -6.21632 -0.68659 0.09618 0.24831 0.63151 0.73618 1.50728 1.51148 1.58330 1.76512 1.85584 2.45591 2.52214 2.96627 3.23402 3.54440 3.80559 4.15245 4.40518 4.49630 4.54355 4.56498 4.59186 4.83700 4.90855 5.05503 5.12570 5.30193 5.34472 5.63151 5.87317 6.07424 6.30532 6.89452 7.08020 7.48017 8.98600 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.003911 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.055784 B = 7157.630477 C = 7471.435000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H -0.002 1.002 4 C -0.529 4.529 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.292 1.292 11 H -0.267 1.267 12 C -0.017 4.017 13 C 0.222 3.778 14 N -0.502 5.502 15 C 0.230 3.770 16 C -0.125 4.125 17 C 0.123 3.877 18 N -0.486 5.486 19 S 0.350 5.650 20 C -0.153 4.153 21 N -0.398 5.398 22 O 0.070 5.930 23 H 0.055 0.945 24 H 0.012 0.988 25 H 0.044 0.956 26 H 0.260 0.740 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.197 0.803 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 2.374 -14.534 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.030 3.970 3 H 0.016 0.984 4 C -0.567 4.567 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.218 1.218 11 H -0.192 1.192 12 C -0.055 4.055 13 C 0.003 3.997 14 N -0.236 5.236 15 C -0.043 4.043 16 C -0.145 4.145 17 C -0.076 4.076 18 N -0.306 5.306 19 S 0.502 5.498 20 C -0.303 4.303 21 N -0.109 5.109 22 O 0.014 5.986 23 H 0.074 0.926 24 H 0.031 0.969 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.213 0.787 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.400 4.392 -16.591 17.718 hybrid contribution -0.549 -1.635 2.464 3.008 sum 3.851 2.758 -14.127 14.900 Atomic orbital electron populations 1.21734 0.98193 0.99835 0.99114 1.18610 0.93063 0.94646 0.90713 0.98378 1.21420 1.31575 1.12972 0.90714 0.90897 1.25753 0.95146 0.95561 1.02153 1.70038 1.37653 1.24253 1.24050 0.85609 0.78845 0.78819 0.78369 1.19460 1.21835 1.19173 1.20690 1.03320 0.97836 0.83690 1.29413 0.81199 0.93313 0.95799 1.72010 1.30387 1.13161 1.08033 1.23404 0.88089 0.97964 0.94868 1.17775 0.97679 1.00668 0.98330 1.22756 1.01384 0.93692 0.89731 1.76586 1.09322 1.17479 1.27170 1.83865 1.16730 1.34353 1.14808 1.27209 1.00435 0.98342 1.04358 1.74805 1.21754 1.06574 1.07812 1.85263 1.38652 1.45457 1.29230 0.92619 0.96937 0.93689 0.93103 0.86654 0.86876 0.78662 0.77485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.02 8.78 71.98 0.63 -5.39 16 2 C 0.05 2.28 2.29 -11.54 -0.03 2.25 16 3 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 4 C -0.53 -26.33 8.56 25.60 0.22 -26.11 16 5 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -51.43 11.32 21.45 0.24 -51.18 16 8 Si 0.96 40.96 29.54 68.60 2.03 42.98 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 C -0.02 -0.59 5.26 29.85 0.16 -0.43 16 13 C 0.22 7.94 6.90 88.35 0.61 8.55 16 14 N -0.50 -18.05 11.48 -302.36 -3.47 -21.52 16 15 C 0.23 7.65 7.89 137.23 1.08 8.74 16 16 C -0.12 -3.37 5.82 -20.90 -0.12 -3.49 16 17 C 0.12 2.99 11.03 85.14 0.94 3.93 16 18 N -0.49 -11.39 12.05 -61.59 -0.74 -12.13 16 19 S 0.35 6.31 23.70 -56.49 -1.34 4.98 16 20 C -0.15 -3.31 11.18 67.38 0.75 -2.55 16 21 N -0.40 -13.78 12.10 -58.99 -0.71 -14.49 16 22 O 0.07 2.49 10.73 74.59 0.80 3.29 16 23 H 0.05 2.92 6.07 -2.38 -0.01 2.90 16 24 H 0.01 0.51 6.93 -2.39 -0.02 0.50 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.26 13.98 8.31 -92.71 -0.77 13.20 16 27 H 0.12 3.55 8.14 -2.38 -0.02 3.53 16 28 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.20 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -59.58 283.01 2.67 -56.92 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.17 Total: 4.57 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.69 Total: -13.40 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -4.69 Total: -99.33 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.80 Total: 3.29 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.34 Total: 4.98 kcal Total: -59.58 2.67 -56.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.859 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds