Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.53004 * 109.47274 * 240.00006 * 2 1 3 5 5 C 1.50698 * 109.47163 * 64.99874 * 4 2 1 6 6 H 1.08001 * 119.99681 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99714 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46944 * 90.00114 * 9 7 5 11 11 H 1.48503 * 109.47424 * 209.99978 * 9 7 5 12 12 H 1.48497 * 109.47202 * 329.99984 * 9 7 5 13 13 C 1.50696 * 109.47092 * 119.99576 * 2 1 3 14 14 N 1.30981 * 126.43103 * 240.31508 * 13 2 1 15 15 C 1.35245 * 105.57711 * 180.09756 * 14 13 2 16 16 C 1.48316 * 126.42006 * 179.88421 * 15 14 13 17 17 C 1.38858 * 122.85956 * 359.41337 * 16 15 14 18 18 N 1.29780 * 116.83157 * 179.74011 * 17 16 15 19 19 S 1.69532 * 107.50702 * 0.49504 * 18 17 16 20 20 C 1.36336 * 122.86285 * 179.71094 * 16 15 14 21 21 N 1.30823 * 107.15911 * 359.61762 * 15 14 13 22 22 O 1.21294 * 110.08615 * 0.24370 * 21 15 14 23 23 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47481 * 300.00136 * 1 2 3 25 25 H 1.08997 * 109.47117 * 60.00791 * 1 2 3 26 26 H 1.08996 * 109.46707 * 184.99753 * 4 2 1 27 27 H 1.08997 * 109.46535 * 304.99725 * 4 2 1 28 28 H 0.96996 * 119.99879 * 180.02562 * 8 7 5 29 29 H 1.07999 * 121.58305 * 0.02562 * 17 16 15 30 30 H 1.08002 * 127.25754 * 359.97408 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7282 8 7 2.6757 -1.5194 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.5629 1.5415 -5.5830 11 1 1.3103 -0.3722 -6.3887 12 1 0.2265 1.2833 -4.9869 13 6 2.0323 -0.7103 1.2305 14 7 2.7836 -0.1970 2.1727 15 6 2.9819 -1.1954 3.0633 16 6 3.7749 -1.1149 4.3140 17 6 4.4351 0.0391 4.7147 18 7 5.0908 -0.0194 5.8331 19 16 4.9117 -1.5892 6.4477 20 6 3.9227 -2.1695 5.1654 21 7 2.3385 -2.2436 2.6176 22 8 1.7897 -1.9806 1.5684 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 3.1263 -0.7994 -1.2055 27 1 1.6054 -1.7198 -1.2951 28 1 2.9229 -1.8423 -4.7317 29 1 4.4006 0.9438 4.1259 30 1 3.5062 -3.1601 5.0577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687173843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = 94.327708 kcal Electronic energy + Delta-G solvation = -16849.410524 eV Core-core repulsion = 13967.488112 eV Total energy + Delta-G solvation = -2881.922412 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.21202 -39.16113 -35.99437 -35.19953 -32.80945 -31.84772 -30.33302 -27.18712 -26.09712 -24.62181 -23.80506 -22.44624 -20.86218 -19.46898 -18.34565 -17.73127 -16.81147 -16.42197 -15.94536 -14.64452 -14.53853 -14.49310 -14.08625 -13.64304 -13.35695 -12.68923 -12.30265 -12.01893 -11.76664 -11.73804 -11.43346 -11.04284 -10.99665 -10.90811 -10.71164 -10.64036 -10.38279 -10.16106 -9.85224 -9.40773 -9.29550 -8.71763 -8.48047 -6.12016 -4.16301 0.24909 1.12107 1.35054 1.52533 1.93213 2.93450 3.21375 3.26964 3.34154 3.35891 3.69217 4.06942 4.37513 4.46473 4.94945 5.24501 5.27141 5.34023 5.52740 5.65420 5.76929 5.86138 6.10699 6.17221 6.31426 6.49700 6.60771 6.77859 7.43140 7.50821 7.83017 8.18607 8.40797 8.88012 9.48580 10.99250 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.044065 B = 0.003668 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.272705 B = 7631.129436 C = 7698.948368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 H 0.108 0.892 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.229 3.771 14 N -0.494 5.494 15 C 0.223 3.777 16 C -0.086 4.086 17 C 0.129 3.871 18 N -0.460 5.460 19 S 0.279 5.721 20 C -0.173 4.173 21 N -0.386 5.386 22 O 0.083 5.917 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.198 0.802 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -0.144 16.261 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.126 0.874 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.010 3.990 14 N -0.227 5.227 15 C -0.050 4.050 16 C -0.106 4.106 17 C -0.071 4.071 18 N -0.278 5.278 19 S 0.431 5.569 20 C -0.324 4.324 21 N -0.095 5.095 22 O 0.024 5.976 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.214 0.786 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.900 -0.462 18.621 18.723 hybrid contribution -1.192 0.312 -2.726 2.991 sum 0.708 -0.150 15.895 15.912 Atomic orbital electron populations 1.21791 0.92877 1.02631 1.02078 1.20424 0.96652 0.98949 0.86274 0.87395 1.19256 0.96903 0.96110 0.88692 1.21042 1.36004 1.08703 0.90284 0.91898 1.24998 0.94942 0.94996 0.99247 1.69960 1.38166 1.20931 1.23873 0.86540 0.79007 0.79715 0.82437 1.20598 1.21212 1.19683 1.29584 0.90997 0.81377 0.97038 1.72037 1.18631 1.28779 1.03269 1.22965 0.99444 0.86361 0.96225 1.17673 1.04275 0.94212 0.94422 1.22862 0.91971 0.99590 0.92633 1.76741 1.24837 1.12148 1.14062 1.84040 1.43078 1.04965 1.24812 1.26833 1.02495 1.03896 0.99136 1.74847 1.13067 1.22920 0.98635 1.85274 1.53952 1.30122 1.28207 0.92252 0.94005 0.89530 0.95936 0.95195 0.92745 0.78590 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.99 37.16 0.33 -1.87 16 2 C 0.00 -0.05 2.81 -91.77 -0.26 -0.30 16 3 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 4 C 0.03 0.67 4.43 -27.88 -0.12 0.54 16 5 C -0.52 -13.31 8.41 -34.44 -0.29 -13.60 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.23 4.22 7.00 -12.98 -0.09 4.13 16 14 N -0.49 -8.85 11.49 -9.87 -0.11 -8.96 16 15 C 0.22 3.74 7.89 -156.09 -1.23 2.51 16 16 C -0.09 -1.19 5.83 -106.21 -0.62 -1.81 16 17 C 0.13 1.64 11.05 -18.19 -0.20 1.44 16 18 N -0.46 -5.73 12.05 29.18 0.35 -5.38 16 19 S 0.28 2.76 23.70 -107.50 -2.55 0.21 16 20 C -0.17 -1.92 11.17 30.05 0.34 -1.59 16 21 N -0.39 -6.84 12.09 30.98 0.37 -6.46 16 22 O 0.08 1.55 11.29 18.05 0.20 1.75 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 1.44 6.95 -51.93 -0.36 1.08 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.20 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 286.93 15.07 4.32 4.32 Total: -1.00 -28.84 286.93 -6.76 -35.60 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -2.83 Total: -2.72 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.24 Total: -9.03 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 1.35 Total: -45.49 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.55 Total: 0.21 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.84 -6.76 -35.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.923 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds