Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.53004 * 109.47274 * 240.00006 * 2 1 3 5 5 C 1.50698 * 109.47163 * 64.99874 * 4 2 1 6 6 H 1.08001 * 119.99681 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99714 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46944 * 90.00114 * 9 7 5 11 11 H 1.48503 * 109.47424 * 209.99978 * 9 7 5 12 12 H 1.48497 * 109.47202 * 329.99984 * 9 7 5 13 13 C 1.50696 * 109.47092 * 119.99576 * 2 1 3 14 14 N 1.30981 * 126.43103 * 240.31508 * 13 2 1 15 15 C 1.35245 * 105.57711 * 180.09756 * 14 13 2 16 16 C 1.48316 * 126.42006 * 179.88421 * 15 14 13 17 17 C 1.38858 * 122.85956 * 359.41337 * 16 15 14 18 18 N 1.29780 * 116.83157 * 179.74011 * 17 16 15 19 19 S 1.69532 * 107.50702 * 0.49504 * 18 17 16 20 20 C 1.36336 * 122.86285 * 179.71094 * 16 15 14 21 21 N 1.30823 * 107.15911 * 359.61762 * 15 14 13 22 22 O 1.21294 * 110.08615 * 0.24370 * 21 15 14 23 23 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47481 * 300.00136 * 1 2 3 25 25 H 1.08997 * 109.47117 * 60.00791 * 1 2 3 26 26 H 1.08996 * 109.46707 * 184.99753 * 4 2 1 27 27 H 1.08997 * 109.46535 * 304.99725 * 4 2 1 28 28 H 0.96996 * 119.99879 * 180.02562 * 8 7 5 29 29 H 1.07999 * 121.58305 * 0.02562 * 17 16 15 30 30 H 1.08002 * 127.25754 * 359.97408 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7282 8 7 2.6757 -1.5194 -3.8511 9 14 1.4977 0.5620 -5.2497 10 1 2.5629 1.5415 -5.5830 11 1 1.3103 -0.3722 -6.3887 12 1 0.2265 1.2833 -4.9869 13 6 2.0323 -0.7103 1.2305 14 7 2.7836 -0.1970 2.1727 15 6 2.9819 -1.1954 3.0633 16 6 3.7749 -1.1149 4.3140 17 6 4.4351 0.0391 4.7147 18 7 5.0908 -0.0194 5.8331 19 16 4.9117 -1.5892 6.4477 20 6 3.9227 -2.1695 5.1654 21 7 2.3385 -2.2436 2.6176 22 8 1.7897 -1.9806 1.5684 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 3.1263 -0.7994 -1.2055 27 1 1.6054 -1.7198 -1.2951 28 1 2.9229 -1.8423 -4.7317 29 1 4.4006 0.9438 4.1259 30 1 3.5062 -3.1601 5.0577 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687173843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = 75.901431 kcal Electronic energy + Delta-G solvation = -16850.209547 eV Core-core repulsion = 13967.488112 eV Total energy + Delta-G solvation = -2882.721435 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.57829 -40.13008 -37.55206 -36.59136 -34.57625 -33.18667 -31.60260 -28.97802 -27.16301 -26.17805 -25.15074 -24.00755 -22.15310 -20.65227 -19.42048 -19.12980 -18.60449 -17.81254 -17.04950 -16.49242 -16.09753 -15.46459 -15.25982 -14.84586 -14.53466 -14.41317 -13.84680 -13.59371 -13.10738 -13.00447 -12.81525 -12.66592 -12.56936 -12.26030 -12.23861 -11.98850 -11.75439 -11.72999 -11.23315 -11.15340 -10.71509 -10.52884 -9.70454 -8.16116 -6.26395 -0.71115 0.05147 0.23255 0.63230 0.70782 1.48746 1.48967 1.59692 1.73949 1.79687 2.42682 2.51242 2.80680 3.19859 3.53045 3.87884 4.02436 4.20631 4.29899 4.33883 4.53655 4.59682 4.76169 4.76525 5.07055 5.10507 5.33899 5.40044 5.43778 5.61027 5.82155 6.18526 6.87992 7.01639 7.43058 8.96353 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.044065 B = 0.003668 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.272705 B = 7631.129436 C = 7698.948368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.008 3.992 3 H 0.116 0.884 4 C 0.035 3.965 5 C -0.527 4.527 6 H 0.080 0.920 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.255 1.255 13 C 0.223 3.777 14 N -0.500 5.500 15 C 0.232 3.768 16 C -0.121 4.121 17 C 0.129 3.871 18 N -0.486 5.486 19 S 0.352 5.648 20 C -0.162 4.162 21 N -0.397 5.397 22 O 0.066 5.934 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.084 0.916 26 H -0.012 1.012 27 H 0.006 0.994 28 H 0.262 0.738 29 H 0.199 0.801 30 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 0.645 17.572 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.134 0.866 4 C -0.003 4.003 5 C -0.565 4.565 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.179 1.179 13 C 0.004 3.996 14 N -0.233 5.233 15 C -0.041 4.041 16 C -0.141 4.141 17 C -0.069 4.069 18 N -0.306 5.306 19 S 0.504 5.496 20 C -0.313 4.313 21 N -0.109 5.109 22 O 0.011 5.989 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.007 0.993 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.215 0.785 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.447 0.341 19.928 19.983 hybrid contribution -0.958 -0.012 -2.933 3.086 sum 0.489 0.329 16.995 17.005 Atomic orbital electron populations 1.21748 0.90728 1.02924 1.03340 1.20199 0.98339 0.98454 0.84232 0.86576 1.19049 0.94660 0.95517 0.91050 1.21512 1.35137 1.09031 0.90825 0.90243 1.25927 0.95051 0.95905 1.02754 1.70110 1.40002 1.22961 1.24478 0.85457 0.79249 0.78164 0.78255 1.20295 1.21553 1.17871 1.29469 0.91387 0.81534 0.97258 1.72033 1.18416 1.29346 1.03544 1.23437 0.98548 0.85533 0.96584 1.17761 1.06186 0.95761 0.94393 1.22795 0.91878 0.99492 0.92773 1.76610 1.25365 1.14402 1.14174 1.83852 1.40668 1.02650 1.22436 1.27190 1.01313 1.04002 0.98779 1.74821 1.14089 1.23323 0.98681 1.85254 1.54593 1.30190 1.28826 0.92498 0.91184 0.89707 0.99323 0.97520 0.92908 0.78489 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.99 71.98 0.65 -3.41 16 2 C 0.01 0.30 2.81 -11.54 -0.03 0.27 16 3 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 4 C 0.04 1.71 4.43 29.85 0.13 1.84 16 5 C -0.53 -26.93 8.41 25.60 0.22 -26.71 16 6 H 0.08 3.71 7.06 -2.91 -0.02 3.69 16 7 C 0.00 0.08 5.46 84.65 0.46 0.55 16 8 N -0.94 -54.73 13.29 21.45 0.28 -54.44 16 9 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 13 C 0.22 8.26 7.00 88.35 0.62 8.88 16 14 N -0.50 -17.82 11.49 -302.40 -3.48 -21.30 16 15 C 0.23 7.69 7.89 137.24 1.08 8.77 16 16 C -0.12 -3.18 5.83 -20.89 -0.12 -3.31 16 17 C 0.13 3.15 11.05 85.14 0.94 4.09 16 18 N -0.49 -11.25 12.05 -61.59 -0.74 -12.00 16 19 S 0.35 5.97 23.70 -56.49 -1.34 4.63 16 20 C -0.16 -3.25 11.17 67.38 0.75 -2.49 16 21 N -0.40 -14.03 12.09 -59.02 -0.71 -14.75 16 22 O 0.07 2.49 11.29 74.65 0.84 3.34 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 2.68 6.95 -2.39 -0.02 2.67 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.20 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -62.22 286.93 2.75 -59.47 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.17 Total: 2.92 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.70 Total: -11.53 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -4.65 Total: -102.48 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.84 Total: 3.34 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.34 Total: 4.63 kcal Total: -62.22 2.75 -59.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.370 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds