Wall clock time and date at job start Mon Mar 30 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47160 * 240.00061 * 3 2 1 5 5 H 1.48496 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00110 * 3 2 1 7 7 C 1.37875 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99955 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46848 * 184.83223 * 9 7 2 11 11 C 1.46894 * 111.00698 * 285.65691 * 10 9 7 12 12 C 1.50697 * 109.47573 * 170.00250 * 11 10 9 13 13 C 1.34014 * 122.42905 * 90.01778 * 12 11 10 14 14 S 1.70612 * 111.00163 * 179.97438 * 13 12 11 15 15 C 1.75836 * 91.57008 * 0.02562 * 14 13 12 16 16 C 1.41231 * 125.48230 * 180.02562 * 15 14 13 17 17 O 1.21446 * 119.99933 * 179.97438 * 16 15 14 18 18 C 1.37195 * 109.03607 * 359.76362 * 15 14 13 19 19 C 1.46901 * 110.99531 * 161.69823 * 10 9 7 20 20 C 1.52999 * 117.50145 * 10.75199 * 19 10 9 21 21 C 1.53002 * 117.50099 * 302.12689 * 19 10 9 22 22 H 0.97003 * 119.99577 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47279 * 64.83811 * 9 7 2 24 24 H 1.08990 * 109.47240 * 304.83672 * 9 7 2 25 25 H 1.09001 * 109.46927 * 49.99490 * 11 10 9 26 26 H 1.09001 * 109.46863 * 290.00394 * 11 10 9 27 27 H 1.08008 * 124.50312 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.00146 * 359.96885 * 16 15 14 29 29 H 1.08002 * 123.37559 * 180.25796 * 18 15 14 30 30 H 1.09002 * 115.54847 * 156.46201 * 19 10 9 31 31 H 1.09002 * 117.49743 * 359.97438 * 20 19 10 32 32 H 1.08999 * 117.49775 * 145.01518 * 20 19 10 33 33 H 1.09000 * 117.49423 * 214.97559 * 21 19 10 34 34 H 1.08998 * 117.49804 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2012 -3.6132 0.1178 11 6 2.9196 -3.8278 -1.1454 12 6 4.0475 -4.8021 -0.9227 13 6 3.8925 -6.1256 -1.0651 14 16 5.3513 -6.9501 -0.7444 15 6 6.1870 -5.4401 -0.4078 16 6 7.5456 -5.3191 -0.0411 17 8 8.0225 -4.2220 0.1687 18 6 5.3086 -4.3979 -0.5643 19 6 1.5217 -4.8411 0.5522 20 6 -0.0083 -4.8381 0.5567 21 6 0.7607 -4.7959 1.8788 22 1 -0.4850 0.8401 -0.0004 23 1 0.6911 -2.5955 -0.9298 24 1 0.5605 -2.5201 0.8437 25 1 3.3233 -2.8792 -1.4994 26 1 2.2330 -4.2308 -1.8899 27 1 2.9670 -6.6066 -1.3455 28 1 8.1603 -6.2021 0.0528 29 1 5.5819 -3.3634 -0.4179 30 1 2.0228 -5.7732 0.2910 31 1 -0.5107 -3.9249 0.2377 32 1 -0.5141 -5.7684 0.2981 33 1 0.7607 -5.6985 2.4899 34 1 0.7645 -3.8552 2.4294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695011574.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:47 Heat of formation + Delta-G solvation = 16.050892 kcal Electronic energy + Delta-G solvation = -17499.355315 eV Core-core repulsion = 14717.578909 eV Total energy + Delta-G solvation = -2781.776406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63173 -39.85909 -38.24808 -35.34861 -34.08339 -31.61157 -29.16955 -27.27900 -26.34669 -24.53888 -23.15690 -22.06864 -20.62177 -20.09546 -18.94243 -18.43679 -17.10137 -16.83857 -16.64174 -16.41552 -16.00504 -15.46610 -14.98619 -14.68616 -14.30786 -14.21053 -13.74587 -13.59986 -13.30572 -13.05095 -12.86148 -12.58328 -12.48819 -12.33042 -12.00247 -11.84663 -11.60852 -11.17301 -11.13579 -10.93535 -10.62288 -9.80486 -9.31403 -8.82632 -8.22934 -6.32707 -0.69122 0.62172 0.90135 1.17505 1.36871 1.39350 1.47409 2.01661 2.36865 2.95875 3.08674 3.41096 3.48710 3.95807 4.05039 4.09637 4.18191 4.22949 4.36831 4.44756 4.61431 4.74387 4.78680 4.84373 4.97285 5.07270 5.18131 5.24125 5.27324 5.32271 5.53768 5.62420 6.04977 6.34027 6.49911 6.62424 6.82519 7.36529 8.86782 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.006161 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.412402 B = 4543.474551 C = 5805.000023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.212 3.788 10 N -0.512 5.512 11 C 0.122 3.878 12 C -0.122 4.122 13 C -0.220 4.220 14 S 0.322 5.678 15 C -0.353 4.353 16 C 0.413 3.587 17 O -0.513 6.513 18 C -0.042 4.042 19 C 0.016 3.984 20 C -0.222 4.222 21 C -0.172 4.172 22 H 0.265 0.735 23 H -0.034 1.034 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.189 0.811 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.925 -19.120 -2.198 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.086 3.914 10 N -0.234 5.234 11 C -0.007 4.007 12 C -0.135 4.135 13 C -0.359 4.359 14 S 0.592 5.408 15 C -0.471 4.471 16 C 0.276 3.724 17 O -0.392 6.392 18 C -0.077 4.077 19 C -0.094 4.094 20 C -0.261 4.261 21 C -0.210 4.210 22 H 0.074 0.926 23 H -0.017 1.017 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.206 0.794 28 H 0.170 0.830 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.816 -19.861 -1.755 22.224 hybrid contribution -1.407 2.933 -0.558 3.301 sum 8.409 -16.928 -2.313 19.042 Atomic orbital electron populations 1.70056 1.07447 1.27900 1.51684 1.25795 0.95701 1.02771 0.94852 0.85558 0.78314 0.78556 0.78954 1.19407 1.20413 1.19804 1.21455 0.93410 0.91501 1.50110 0.92667 1.19413 0.90223 0.88093 0.93683 1.61881 1.28219 1.03823 1.29511 1.20545 0.92738 0.97105 0.90313 1.18573 0.95046 0.94481 1.05356 1.25666 1.06218 0.97560 1.06417 1.82218 0.96237 1.03378 1.59007 1.24861 1.02850 0.99372 1.20018 1.22429 0.86381 0.93489 0.70115 1.90608 1.75428 1.33502 1.39670 1.20816 0.92257 0.99970 0.94650 1.22915 0.90617 0.94672 1.01167 1.23508 0.96588 1.03039 1.02939 1.23021 1.04151 1.02825 0.90959 0.92640 1.01669 0.96507 0.91923 0.94209 0.79362 0.83025 0.86116 0.84351 0.91382 0.86475 0.85792 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.53 -30.67 8.58 25.60 0.22 -30.45 16 8 H 0.06 3.22 7.57 -2.91 -0.02 3.20 16 9 C 0.21 11.31 3.38 85.56 0.29 11.60 16 10 N -0.51 -22.23 4.64 -880.08 -4.08 -26.32 16 11 C 0.12 4.67 5.06 85.56 0.43 5.10 16 12 C -0.12 -3.66 4.90 -21.07 -0.10 -3.77 16 13 C -0.22 -4.63 8.99 66.86 0.60 -4.03 16 14 S 0.32 4.82 23.06 -56.49 -1.30 3.52 16 15 C -0.35 -8.31 6.26 22.76 0.14 -8.17 16 16 C 0.41 9.06 11.46 68.56 0.79 9.85 16 17 O -0.51 -16.71 17.55 -3.55 -0.06 -16.78 16 18 C -0.04 -1.33 9.73 21.78 0.21 -1.12 16 19 C 0.02 0.55 5.83 44.92 0.26 0.81 16 20 C -0.22 -7.61 9.56 30.60 0.29 -7.32 16 21 C -0.17 -5.81 9.91 30.60 0.30 -5.51 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 23 H -0.03 -1.97 7.81 -2.39 -0.02 -1.99 16 24 H 0.02 0.97 5.63 -2.39 -0.01 0.96 16 25 H 0.06 2.73 7.19 -2.39 -0.02 2.71 16 26 H 0.04 1.43 8.10 -2.39 -0.02 1.42 16 27 H 0.19 3.09 7.59 -2.91 -0.02 3.07 16 28 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.12 4.47 8.02 -2.91 -0.02 4.45 16 30 H 0.14 3.82 5.47 -2.39 -0.01 3.81 16 31 H 0.07 2.90 6.03 -2.39 -0.01 2.89 16 32 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 2.65 7.45 -2.39 -0.02 2.63 16 Total: -1.00 -72.51 302.01 1.87 -70.64 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.11 Total: 9.50 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.90 Total: -32.12 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.80 Total: -82.62 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.06 Total: -16.78 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.30 Total: 3.52 kcal Total: -72.51 1.87 -70.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695011574.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.689 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds