Wall clock time and date at job start Mon Mar 30 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.28731 * 124.73893 * 239.72024 * 4 2 1 6 6 C 1.32572 * 117.13317 * 179.80817 * 5 4 2 7 7 C 1.48263 * 122.97994 * 180.22295 * 6 5 4 8 8 N 1.31381 * 126.21398 * 359.93889 * 7 6 5 9 9 O 1.21270 * 110.50800 * 179.85767 * 8 7 6 10 10 C 1.34743 * 109.78350 * 0.40101 * 9 8 7 11 11 C 1.40354 * 126.67029 * 179.74816 * 10 9 8 12 12 H 1.08001 * 119.99922 * 179.97438 * 11 10 9 13 13 C 1.40413 * 120.00021 * 0.02562 * 11 10 9 14 14 N 1.30526 * 120.00157 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00145 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47489 * 90.00112 * 15 13 11 17 17 H 1.48507 * 109.47332 * 210.00073 * 15 13 11 18 18 H 1.48499 * 109.46976 * 329.99817 * 15 13 11 19 19 N 1.33195 * 106.65788 * 359.75153 * 10 9 8 20 20 C 1.34913 * 114.04162 * 0.47695 * 6 5 4 21 21 S 1.70907 * 124.74152 * 60.01872 * 4 2 1 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.97003 * 120.00410 * 180.02562 * 14 13 11 30 30 H 1.08000 * 126.07059 * 179.73659 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.7798 -1.7584 -1.2188 6 6 3.1312 -2.2635 -2.3931 7 6 3.9836 -3.4688 -2.5307 8 7 4.4914 -4.1768 -1.5473 9 8 5.1413 -5.1035 -1.9824 10 6 5.1239 -5.0799 -3.3295 11 6 5.7635 -5.9838 -4.1920 12 1 5.6769 -5.8629 -5.2617 13 6 6.5151 -7.0459 -3.6641 14 7 6.6194 -7.1923 -2.3713 15 14 7.3658 -8.2493 -4.8119 16 1 8.7342 -7.7597 -5.1167 17 1 7.4503 -9.5805 -4.1592 18 1 6.5890 -8.3644 -6.0723 19 7 4.3818 -4.0320 -3.6835 20 6 2.6488 -1.5805 -3.4518 21 16 1.6954 -0.2328 -2.8366 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 7.1389 -7.9258 -2.0065 30 1 2.8173 -1.8176 -4.4919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695369779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:36 Heat of formation + Delta-G solvation = 79.635192 kcal Electronic energy + Delta-G solvation = -16872.105202 eV Core-core repulsion = 13989.545675 eV Total energy + Delta-G solvation = -2882.559527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.06940 -39.48798 -35.68682 -34.16417 -33.52951 -30.65159 -29.25733 -27.34359 -26.65292 -25.13609 -22.96144 -21.49620 -20.64159 -19.69877 -18.23428 -16.61760 -15.91390 -15.65230 -15.46442 -14.96105 -14.49203 -14.32562 -13.82868 -13.33608 -12.99945 -12.92913 -12.37717 -11.85154 -11.75965 -11.62918 -11.49015 -11.41275 -11.37793 -11.00439 -10.55179 -10.21075 -10.16385 -9.86571 -9.37593 -9.16716 -9.03880 -8.77981 -7.91667 -7.11281 -5.06850 0.92350 1.55682 1.92321 2.61133 2.81762 2.95024 3.01217 3.44321 3.71410 3.99751 4.20577 4.72241 4.87120 4.95788 4.99738 5.25446 5.33990 5.42409 5.52501 5.62084 5.63301 5.77172 5.83586 6.06715 6.07765 6.21604 6.43300 6.81943 7.21146 7.80803 8.00728 8.04242 8.26909 8.40818 9.87848 10.27644 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.052494 B = 0.004098 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.262985 B = 6831.081614 C = 7178.585627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 C -0.146 4.146 4 C 0.052 3.948 5 N -0.446 5.446 6 C 0.170 3.830 7 C 0.212 3.788 8 N -0.430 5.430 9 O 0.057 5.943 10 C 0.304 3.696 11 C -0.414 4.414 12 H 0.115 0.885 13 C 0.070 3.930 14 N -0.762 5.762 15 Si 0.938 3.062 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.256 1.256 19 N -0.603 5.603 20 C -0.219 4.219 21 S 0.102 5.898 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.293 0.707 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 10.725 0.824 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 C -0.204 4.204 4 C -0.228 4.228 5 N -0.160 5.160 6 C 0.039 3.961 7 C -0.061 4.061 8 N -0.155 5.155 9 O 0.004 5.996 10 C 0.113 3.887 11 C -0.452 4.452 12 H 0.132 0.868 13 C -0.155 4.155 14 N -0.389 5.389 15 Si 0.760 3.240 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.179 1.179 19 N -0.347 5.347 20 C -0.360 4.360 21 S 0.356 5.644 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.213 11.599 1.587 14.301 hybrid contribution 1.117 -1.576 -0.612 2.027 sum -7.096 10.023 0.974 12.319 Atomic orbital electron populations 1.21914 0.93297 1.02758 1.02432 1.19808 0.95961 0.95308 0.93081 1.21915 1.01932 0.94129 1.02431 1.26921 1.00418 0.96717 0.98776 1.66049 1.12066 1.09679 1.28206 1.17157 0.98302 0.94367 0.86295 1.22145 1.00448 0.96248 0.87250 1.74787 1.14678 1.02695 1.23299 1.85564 1.54194 1.37388 1.22427 1.24160 0.91317 0.91626 0.81589 1.18579 1.26207 1.06331 0.94069 0.86759 1.26203 0.95013 0.98199 0.96088 1.69639 1.28926 1.27598 1.12771 0.85809 0.79765 0.78239 0.80150 1.18825 1.19674 1.17943 1.72343 1.25028 1.13267 1.24112 1.27036 1.05125 0.99099 1.04786 1.83534 1.49547 1.29161 1.02198 0.91312 0.91953 0.92214 0.88068 0.91316 0.91955 0.92216 0.89544 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.09 37.16 0.34 -1.05 16 2 C -0.02 -0.23 3.34 -91.77 -0.31 -0.54 16 3 C -0.15 -1.39 9.09 37.16 0.34 -1.05 16 4 C 0.05 0.84 6.01 -13.57 -0.08 0.76 16 5 N -0.45 -9.43 10.55 -8.43 -0.09 -9.52 16 6 C 0.17 3.88 6.72 -84.61 -0.57 3.31 16 7 C 0.21 5.80 7.96 -156.46 -1.25 4.55 16 8 N -0.43 -12.56 12.20 31.49 0.38 -12.17 16 9 O 0.06 1.71 9.71 15.16 0.15 1.86 16 10 C 0.30 8.75 7.80 -16.32 -0.13 8.63 16 11 C -0.41 -10.90 9.48 -37.97 -0.36 -11.26 16 12 H 0.11 2.81 7.85 -52.49 -0.41 2.39 16 13 C 0.07 1.69 5.50 -17.29 -0.10 1.60 16 14 N -0.76 -19.43 12.05 55.57 0.67 -18.76 16 15 Si 0.94 17.43 29.56 -169.99 -5.03 12.41 16 16 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 17 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 18 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 19 N -0.60 -16.89 11.53 -11.61 -0.13 -17.02 16 20 C -0.22 -4.10 11.12 29.55 0.33 -3.77 16 21 S 0.10 1.44 22.48 -107.50 -2.42 -0.97 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 25 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 29 H 0.29 6.59 8.29 -40.82 -0.34 6.26 16 30 H 0.19 3.30 8.06 -52.49 -0.42 2.88 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -31.78 286.26 -6.84 -38.61 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -2.90 Total: 0.09 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.78 Total: 1.17 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.83 Total: -57.48 kcal Atomic # 8 Polarization: 1.71 SS G_CDS: 0.15 Total: 1.86 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.42 Total: -0.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.78 -6.84 -38.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695369779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.249 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds