Wall clock time and date at job start Mon Mar 30 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.28731 * 124.73893 * 239.72024 * 4 2 1 6 6 C 1.32572 * 117.13317 * 179.80817 * 5 4 2 7 7 C 1.48263 * 122.97994 * 180.22295 * 6 5 4 8 8 N 1.31381 * 126.21398 * 359.93889 * 7 6 5 9 9 O 1.21270 * 110.50800 * 179.85767 * 8 7 6 10 10 C 1.34743 * 109.78350 * 0.40101 * 9 8 7 11 11 C 1.40354 * 126.67029 * 179.74816 * 10 9 8 12 12 H 1.08001 * 119.99922 * 179.97438 * 11 10 9 13 13 C 1.40413 * 120.00021 * 0.02562 * 11 10 9 14 14 N 1.30526 * 120.00157 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00145 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47489 * 90.00112 * 15 13 11 17 17 H 1.48507 * 109.47332 * 210.00073 * 15 13 11 18 18 H 1.48499 * 109.46976 * 329.99817 * 15 13 11 19 19 N 1.33195 * 106.65788 * 359.75153 * 10 9 8 20 20 C 1.34913 * 114.04162 * 0.47695 * 6 5 4 21 21 S 1.70907 * 124.74152 * 60.01872 * 4 2 1 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.97003 * 120.00410 * 180.02562 * 14 13 11 30 30 H 1.08000 * 126.07059 * 179.73659 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.7798 -1.7584 -1.2188 6 6 3.1312 -2.2635 -2.3931 7 6 3.9836 -3.4688 -2.5307 8 7 4.4914 -4.1768 -1.5473 9 8 5.1413 -5.1035 -1.9824 10 6 5.1239 -5.0799 -3.3295 11 6 5.7635 -5.9838 -4.1920 12 1 5.6769 -5.8629 -5.2617 13 6 6.5151 -7.0459 -3.6641 14 7 6.6194 -7.1923 -2.3713 15 14 7.3658 -8.2493 -4.8119 16 1 8.7342 -7.7597 -5.1167 17 1 7.4503 -9.5805 -4.1592 18 1 6.5890 -8.3644 -6.0723 19 7 4.3818 -4.0320 -3.6835 20 6 2.6488 -1.5805 -3.4518 21 16 1.6954 -0.2328 -2.8366 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 7.1389 -7.9258 -2.0065 30 1 2.8173 -1.8176 -4.4919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695369779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:36 Heat of formation + Delta-G solvation = 56.265646 kcal Electronic energy + Delta-G solvation = -16873.118581 eV Core-core repulsion = 13989.545675 eV Total energy + Delta-G solvation = -2883.572907 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.13834 -40.92136 -36.76399 -36.14169 -35.45228 -32.61730 -30.79376 -28.66750 -28.07811 -26.61240 -24.55239 -23.53556 -21.95711 -21.24753 -19.93052 -18.12037 -18.03200 -17.45126 -17.08953 -16.45172 -15.85216 -15.66110 -15.23763 -14.93366 -14.22541 -13.92464 -13.72047 -13.50340 -13.10835 -13.07440 -12.89378 -12.61675 -12.33435 -12.25766 -12.06672 -11.98459 -11.90522 -11.60901 -11.18324 -10.70130 -10.65537 -10.49771 -9.56466 -8.98772 -7.16252 -0.48549 0.25239 0.54522 0.81754 1.20116 1.40653 1.61735 1.73315 2.14443 2.33970 2.62645 2.98765 3.20676 3.44215 3.82882 3.98639 4.13043 4.18334 4.44541 4.52414 4.76137 4.76703 4.89680 4.90501 4.91977 5.10674 5.27266 5.29131 5.32810 5.76800 5.97331 6.17199 6.38745 6.67574 8.02775 8.18416 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.052494 B = 0.004098 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.262985 B = 6831.081614 C = 7178.585627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.044 3.956 5 N -0.496 5.496 6 C 0.122 3.878 7 C 0.219 3.781 8 N -0.469 5.469 9 O 0.022 5.978 10 C 0.269 3.731 11 C -0.427 4.427 12 H 0.128 0.872 13 C 0.027 3.973 14 N -0.795 5.795 15 Si 1.026 2.974 16 H -0.253 1.253 17 H -0.259 1.259 18 H -0.246 1.246 19 N -0.621 5.621 20 C -0.227 4.227 21 S 0.228 5.772 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.307 0.693 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 12.002 -0.376 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.200 4.200 4 C -0.235 4.235 5 N -0.211 5.211 6 C -0.009 4.009 7 C -0.055 4.055 8 N -0.201 5.201 9 O -0.024 6.024 10 C 0.081 3.919 11 C -0.464 4.464 12 H 0.146 0.854 13 C -0.195 4.195 14 N -0.422 5.422 15 Si 0.842 3.158 16 H -0.177 1.177 17 H -0.183 1.183 18 H -0.169 1.169 19 N -0.367 5.367 20 C -0.370 4.370 21 S 0.483 5.517 22 H 0.115 0.885 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.127 12.878 0.392 15.789 hybrid contribution 1.306 -1.838 -0.237 2.267 sum -7.821 11.040 0.154 13.531 Atomic orbital electron populations 1.21931 0.91000 1.02501 1.04551 1.20093 0.97682 0.96145 0.90730 1.21932 1.01049 0.92458 1.04550 1.27784 0.98497 0.95390 1.01838 1.66012 1.14669 1.12170 1.28287 1.17114 1.00646 0.94738 0.88429 1.22937 0.99278 0.96785 0.86514 1.74696 1.17083 1.04001 1.24316 1.85482 1.55639 1.38413 1.22862 1.24848 0.92393 0.92755 0.81883 1.19208 1.26008 1.06606 0.94587 0.85431 1.27473 0.94769 0.99402 0.97874 1.69709 1.28835 1.28515 1.15166 0.84554 0.78462 0.75239 0.77537 1.17661 1.18301 1.16865 1.72298 1.26004 1.13744 1.24638 1.27336 1.04704 1.00526 1.04410 1.82996 1.45690 1.24493 0.98537 0.88479 0.93411 0.90844 0.89379 0.88481 0.93427 0.90846 0.88101 0.79372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.09 71.98 0.65 -1.62 16 2 C -0.02 -0.53 3.34 -11.54 -0.04 -0.57 16 3 C -0.14 -2.28 9.09 71.98 0.65 -1.62 16 4 C 0.04 1.38 6.01 88.56 0.53 1.92 16 5 N -0.50 -21.61 10.55 -180.60 -1.91 -23.51 16 6 C 0.12 5.78 6.72 40.94 0.27 6.06 16 7 C 0.22 12.66 7.96 137.34 1.09 13.76 16 8 N -0.47 -29.35 12.20 -55.93 -0.68 -30.03 16 9 O 0.02 1.43 9.71 64.34 0.62 2.05 16 10 C 0.27 16.35 7.80 85.06 0.66 17.01 16 11 C -0.43 -23.06 9.48 23.31 0.22 -22.84 16 12 H 0.13 6.33 7.85 -2.91 -0.02 6.30 16 13 C 0.03 1.30 5.50 85.42 0.47 1.77 16 14 N -0.80 -41.41 12.05 21.90 0.26 -41.14 16 15 Si 1.03 34.61 29.56 68.60 2.03 36.64 16 16 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 17 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 18 H -0.25 -7.85 7.11 99.48 0.71 -7.15 16 19 N -0.62 -36.65 11.53 -304.97 -3.52 -40.16 16 20 C -0.23 -8.49 11.12 67.06 0.75 -7.74 16 21 S 0.23 5.81 22.48 -56.49 -1.27 4.54 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.97 7.92 -2.38 -0.02 0.95 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.97 7.92 -2.39 -0.02 0.95 16 29 H 0.31 13.90 8.29 -92.71 -0.77 13.13 16 30 H 0.19 6.72 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -75.42 286.26 1.99 -73.44 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.17 Total: 12.07 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.27 Total: 6.11 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.84 Total: -134.85 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.62 Total: 2.05 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.03 Total: 36.64 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.27 Total: 4.54 kcal Total: -75.42 1.99 -73.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695369779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.704 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds