Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47535 * 2 1 4 4 C 1.53001 * 109.47473 * 239.99834 * 2 1 3 5 5 C 1.50697 * 109.47277 * 175.00283 * 4 2 1 6 6 H 1.07998 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99958 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99810 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99787 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47451 * 89.99639 * 9 7 5 11 11 H 1.48501 * 109.46766 * 209.99613 * 9 7 5 12 12 H 1.48496 * 109.47327 * 329.99198 * 9 7 5 13 13 O 1.42909 * 109.46819 * 120.00071 * 2 1 3 14 14 C 1.35709 * 116.99563 * 275.04997 * 13 2 1 15 15 C 1.38611 * 120.14324 * 5.47879 * 14 13 2 16 16 C 1.38144 * 120.12671 * 180.02562 * 15 14 13 17 17 C 1.38461 * 120.40773 * 359.97438 * 16 15 14 18 18 C 1.37982 * 120.28385 * 359.96578 * 17 16 15 19 19 Cl 1.73606 * 120.07004 * 179.97438 * 18 17 16 20 20 C 1.39847 * 119.86795 * 0.26818 * 18 17 16 21 21 C 1.43201 * 120.20281 * 179.73392 * 20 18 17 22 22 N 4.92739 * 114.02402 * 130.47202 * 2 1 3 23 23 H 1.08992 * 109.46977 * 300.00337 * 1 2 3 24 24 H 1.09004 * 109.46697 * 60.00384 * 1 2 3 25 25 H 1.08995 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46985 * 295.00543 * 4 2 1 27 27 H 1.09001 * 109.46768 * 54.99859 * 4 2 1 28 28 H 0.97004 * 119.99529 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.93855 * 0.02581 * 15 14 13 30 30 H 1.07991 * 119.79739 * 179.97438 * 16 15 14 31 31 H 1.07999 * 119.85890 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2306 -1.1937 -2.3576 8 7 5.5412 -1.1004 -2.4132 9 14 3.3016 -2.1088 -3.6952 10 1 2.9409 -1.1639 -4.7825 11 1 4.1601 -3.1896 -4.2431 12 1 2.0656 -2.7005 -3.1233 13 8 2.0063 -0.6737 1.1669 14 6 2.1113 0.0613 2.3028 15 6 1.6583 1.3711 2.3288 16 6 1.7658 2.1191 3.4852 17 6 2.3249 1.5691 4.6262 18 6 2.7801 0.2665 4.6196 19 17 3.4808 -0.4173 6.0532 20 6 2.6816 -0.4998 3.4539 21 6 3.1569 -1.8505 3.4374 22 7 3.5361 -2.9212 3.4237 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7517 -1.7716 -1.2056 27 1 1.6055 -0.2618 -2.1369 28 1 6.0256 -1.5072 -3.1487 29 1 1.2205 1.8076 1.4432 30 1 1.4116 3.1392 3.4993 31 1 2.4050 2.1621 5.5253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695832514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = 3.438169 kcal Electronic energy + Delta-G solvation = -17178.250232 eV Core-core repulsion = 14258.050096 eV Total energy + Delta-G solvation = -2920.200135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35014 -37.98312 -36.45767 -36.03483 -33.67384 -32.04157 -31.07981 -29.87443 -28.13208 -23.96356 -23.72618 -22.45850 -20.25778 -19.25524 -17.53728 -16.83756 -16.24899 -15.50744 -15.07953 -14.95196 -14.41294 -13.89013 -13.54905 -13.07901 -12.93454 -12.62185 -12.58294 -12.37035 -12.21422 -12.01416 -11.90558 -11.71169 -11.36389 -11.15122 -11.02380 -10.77496 -10.47444 -9.86573 -9.73517 -9.32259 -8.94071 -8.60243 -8.19106 -6.08985 -4.08331 0.65796 1.20079 1.83994 3.02636 3.06717 3.24864 3.34413 3.36153 3.47205 3.87855 4.05312 4.39338 4.75094 4.97648 5.01252 5.14135 5.25256 5.31546 5.38010 5.40851 5.65698 5.88708 5.89996 6.04075 6.15244 6.28829 6.37784 6.40567 6.89428 7.03785 7.59017 7.70654 7.87147 8.43498 8.94090 9.50925 11.04322 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.005604 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.789958 B = 4994.838392 C = 5566.550218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 H 0.076 0.924 4 C -0.011 4.011 5 C -0.521 4.521 6 H 0.073 0.927 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 O -0.278 6.278 14 C 0.210 3.790 15 C -0.212 4.212 16 C -0.038 4.038 17 C -0.163 4.163 18 C 0.043 3.957 19 Cl -0.054 7.054 20 C -0.066 4.066 21 C 0.263 3.737 22 N -0.405 5.405 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 8.514 12.602 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.048 4.048 5 C -0.559 4.559 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.190 1.190 13 O -0.188 6.188 14 C 0.158 3.842 15 C -0.231 4.231 16 C -0.057 4.057 17 C -0.182 4.182 18 C 0.014 3.986 19 Cl -0.024 7.024 20 C -0.071 4.071 21 C -0.052 4.052 22 N -0.080 5.080 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.954 6.512 12.527 17.274 hybrid contribution -0.415 0.045 -0.786 0.890 sum -10.369 6.557 11.741 16.981 Atomic orbital electron populations 1.22474 0.96234 1.03094 1.02160 1.22804 0.92074 0.97438 0.83982 0.90628 1.19753 0.98291 0.96615 0.90188 1.20960 0.89199 1.35908 1.09809 0.90889 1.24989 0.94748 0.95623 0.97875 1.69904 1.06537 1.44964 1.32181 0.86834 0.80377 0.80148 0.82297 1.20158 1.21185 1.18975 1.86301 1.78529 1.37946 1.16023 1.18938 0.89165 0.89876 0.86181 1.21459 1.07142 0.93673 1.00834 1.21068 0.94079 0.99516 0.91058 1.20780 1.03930 0.93134 1.00342 1.20595 0.97748 0.93518 0.86759 1.98394 1.82370 1.85038 1.36644 1.15021 1.10296 0.88725 0.93043 1.24937 0.93949 0.92277 0.94068 1.81141 1.08492 1.11533 1.06861 0.92597 0.90849 0.91658 0.95236 0.94517 0.92612 0.83490 0.84238 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.17 37.16 0.34 -2.15 16 2 C 0.09 1.65 2.17 -26.73 -0.06 1.60 16 3 H 0.08 1.27 6.31 -51.93 -0.33 0.94 16 4 C -0.01 -0.26 3.75 -27.88 -0.10 -0.36 16 5 C -0.52 -14.51 9.43 -34.44 -0.32 -14.83 16 6 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 O -0.28 -5.42 8.99 -18.83 -0.17 -5.59 16 14 C 0.21 3.40 6.60 -38.71 -0.26 3.14 16 15 C -0.21 -2.60 8.24 -39.48 -0.33 -2.93 16 16 C -0.04 -0.36 10.03 -39.53 -0.40 -0.76 16 17 C -0.16 -1.63 9.81 -39.59 -0.39 -2.02 16 18 C 0.04 0.56 6.35 -39.07 -0.25 0.31 16 19 Cl -0.05 -0.67 28.03 -51.86 -1.45 -2.12 16 20 C -0.07 -1.06 5.75 -106.64 -0.61 -1.67 16 21 C 0.26 5.00 13.93 -22.47 -0.31 4.69 16 22 N -0.40 -8.45 18.54 41.84 0.78 -7.68 16 23 H 0.06 0.63 6.91 -51.93 -0.36 0.27 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.69 7.20 -51.92 -0.37 0.32 16 27 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.15 1.59 5.42 -52.49 -0.28 1.31 16 30 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -32.39 290.54 -6.16 -38.55 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -3.02 Total: -4.23 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.78 Total: -13.07 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.55 Total: -34.59 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.17 Total: -5.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.45 Total: -2.12 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.39 -6.16 -38.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695832514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.991 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds