Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47535 * 2 1 4 4 C 1.53001 * 109.47473 * 239.99834 * 2 1 3 5 5 C 1.50697 * 109.47277 * 175.00283 * 4 2 1 6 6 H 1.07998 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99958 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99810 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99787 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47451 * 89.99639 * 9 7 5 11 11 H 1.48501 * 109.46766 * 209.99613 * 9 7 5 12 12 H 1.48496 * 109.47327 * 329.99198 * 9 7 5 13 13 O 1.42909 * 109.46819 * 120.00071 * 2 1 3 14 14 C 1.35709 * 116.99563 * 275.04997 * 13 2 1 15 15 C 1.38611 * 120.14324 * 5.47879 * 14 13 2 16 16 C 1.38144 * 120.12671 * 180.02562 * 15 14 13 17 17 C 1.38461 * 120.40773 * 359.97438 * 16 15 14 18 18 C 1.37982 * 120.28385 * 359.96578 * 17 16 15 19 19 Cl 1.73606 * 120.07004 * 179.97438 * 18 17 16 20 20 C 1.39847 * 119.86795 * 0.26818 * 18 17 16 21 21 C 1.43201 * 120.20281 * 179.73392 * 20 18 17 22 22 N 4.92739 * 114.02402 * 130.47202 * 2 1 3 23 23 H 1.08992 * 109.46977 * 300.00337 * 1 2 3 24 24 H 1.09004 * 109.46697 * 60.00384 * 1 2 3 25 25 H 1.08995 * 109.47087 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46985 * 295.00543 * 4 2 1 27 27 H 1.09001 * 109.46768 * 54.99859 * 4 2 1 28 28 H 0.97004 * 119.99529 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.93855 * 0.02581 * 15 14 13 30 30 H 1.07991 * 119.79739 * 179.97438 * 16 15 14 31 31 H 1.07999 * 119.85890 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2306 -1.1937 -2.3576 8 7 5.5412 -1.1004 -2.4132 9 14 3.3016 -2.1088 -3.6952 10 1 2.9409 -1.1639 -4.7825 11 1 4.1601 -3.1896 -4.2431 12 1 2.0656 -2.7005 -3.1233 13 8 2.0063 -0.6737 1.1669 14 6 2.1113 0.0613 2.3028 15 6 1.6583 1.3711 2.3288 16 6 1.7658 2.1191 3.4852 17 6 2.3249 1.5691 4.6262 18 6 2.7801 0.2665 4.6196 19 17 3.4808 -0.4173 6.0532 20 6 2.6816 -0.4998 3.4539 21 6 3.1569 -1.8505 3.4374 22 7 3.5361 -2.9212 3.4237 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7517 -1.7716 -1.2056 27 1 1.6055 -0.2618 -2.1369 28 1 6.0256 -1.5072 -3.1487 29 1 1.2205 1.8076 1.4432 30 1 1.4116 3.1392 3.4993 31 1 2.4050 2.1621 5.5253 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695832514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = -16.912063 kcal Electronic energy + Delta-G solvation = -17179.132684 eV Core-core repulsion = 14258.050096 eV Total energy + Delta-G solvation = -2921.082588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49544 -39.14995 -37.54393 -37.40645 -35.45489 -33.75995 -32.22915 -30.91149 -29.80890 -25.20470 -24.98550 -23.92925 -21.64183 -20.43958 -18.99810 -18.65811 -17.42458 -16.60801 -16.39015 -16.26131 -15.86536 -15.21569 -14.91630 -14.69511 -14.27581 -14.09512 -13.87859 -13.80845 -13.66995 -13.57197 -13.12544 -12.80852 -12.52257 -12.50806 -12.21556 -12.10857 -12.00119 -11.68482 -11.34084 -11.25297 -10.79065 -9.97273 -9.28359 -8.30404 -6.34196 -0.38378 0.21160 0.84641 1.32188 1.36946 1.46825 1.58825 1.87795 2.25779 2.33918 2.68656 2.84462 3.06245 3.84503 3.95433 4.03046 4.06151 4.18977 4.30967 4.39845 4.45032 4.83940 4.97356 5.02502 5.05932 5.15176 5.20464 5.29184 5.36417 5.57251 5.62451 6.20673 6.35033 6.50320 6.72570 7.28840 8.86717 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023508 B = 0.005604 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.789958 B = 4994.838392 C = 5566.550218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.084 0.916 4 C -0.014 4.014 5 C -0.522 4.522 6 H 0.028 0.972 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.948 3.052 10 H -0.253 1.253 11 H -0.292 1.292 12 H -0.249 1.249 13 O -0.320 6.320 14 C 0.183 3.817 15 C -0.211 4.211 16 C -0.013 4.013 17 C -0.144 4.144 18 C 0.037 3.963 19 Cl -0.055 7.055 20 C -0.101 4.101 21 C 0.275 3.725 22 N -0.461 5.461 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.165 0.835 30 H 0.192 0.808 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 11.180 12.943 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.102 0.898 4 C -0.052 4.052 5 C -0.560 4.560 6 H 0.047 0.953 7 C -0.196 4.196 8 N -0.594 5.594 9 Si 0.771 3.229 10 H -0.178 1.178 11 H -0.218 1.218 12 H -0.172 1.172 13 O -0.232 6.232 14 C 0.132 3.868 15 C -0.229 4.229 16 C -0.031 4.031 17 C -0.162 4.162 18 C 0.008 3.992 19 Cl -0.026 7.026 20 C -0.107 4.107 21 C -0.039 4.039 22 N -0.138 5.138 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.209 0.791 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.873 9.197 12.889 20.407 hybrid contribution 0.529 -0.628 -0.732 1.100 sum -12.344 8.570 12.157 19.329 Atomic orbital electron populations 1.22391 0.92447 1.03360 1.04596 1.22724 0.94854 0.96666 0.82055 0.89838 1.19746 0.94592 0.96858 0.93963 1.21320 0.92261 1.34403 1.08051 0.95332 1.26037 0.95608 0.96919 1.01016 1.70083 1.08698 1.47022 1.33551 0.85693 0.79174 0.78805 0.79212 1.17760 1.21791 1.17221 1.86202 1.79922 1.39765 1.17356 1.19242 0.90961 0.91488 0.85064 1.21756 1.06485 0.91973 1.02725 1.21668 0.91244 1.01060 0.89127 1.21324 1.01277 0.91614 1.01999 1.20800 0.98170 0.94434 0.85788 1.98395 1.82456 1.85381 1.36353 1.15344 1.12635 0.87807 0.94882 1.25666 0.92702 0.92965 0.92544 1.81108 1.10840 1.13206 1.08678 0.89842 0.88645 0.92514 0.96438 0.92244 0.92669 0.81754 0.79108 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 9.17 71.98 0.66 -3.49 16 2 C 0.09 3.21 2.17 30.60 0.07 3.27 16 3 H 0.08 2.69 6.31 -2.39 -0.02 2.67 16 4 C -0.01 -0.64 3.75 29.85 0.11 -0.53 16 5 C -0.52 -30.02 9.43 25.60 0.24 -29.78 16 6 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 7 C 0.00 0.03 5.47 84.66 0.46 0.50 16 8 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 9 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 10 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 13 O -0.32 -12.74 8.99 -90.30 -0.81 -13.55 16 14 C 0.18 5.82 6.60 22.83 0.15 5.97 16 15 C -0.21 -4.49 8.24 22.34 0.18 -4.30 16 16 C -0.01 -0.17 10.03 22.30 0.22 0.05 16 17 C -0.14 -2.25 9.81 22.26 0.22 -2.03 16 18 C 0.04 0.91 6.35 22.60 0.14 1.06 16 19 Cl -0.06 -1.33 28.03 -2.72 -0.08 -1.41 16 20 C -0.10 -3.30 5.75 -21.17 -0.12 -3.42 16 21 C 0.28 11.05 13.93 88.33 1.23 12.28 16 22 N -0.46 -20.59 18.54 19.00 0.35 -20.24 16 23 H 0.08 1.56 6.91 -2.39 -0.02 1.55 16 24 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.02 0.81 7.20 -2.38 -0.02 0.80 16 27 H 0.06 2.38 7.57 -2.39 -0.02 2.36 16 28 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.17 2.88 5.42 -2.91 -0.02 2.87 16 30 H 0.19 0.77 8.06 -2.92 -0.02 0.75 16 31 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -77.32 290.54 6.32 -71.00 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.10 Total: -0.70 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.57 Total: -20.42 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: 0.65 Total: -81.14 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.81 Total: -13.55 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -77.32 6.32 -71.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695832514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.087 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds