Wall clock time and date at job start Mon Mar 30 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47078 * 2 1 4 4 C 1.53004 * 109.47618 * 120.00199 * 2 1 3 5 5 C 1.50694 * 109.47182 * 185.00074 * 4 2 1 6 6 H 1.07995 * 120.00102 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99983 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00387 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99612 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46991 * 90.00053 * 9 7 5 11 11 H 1.48500 * 109.47020 * 209.99467 * 9 7 5 12 12 H 1.48500 * 109.47413 * 329.99704 * 9 7 5 13 13 O 1.42902 * 109.47127 * 240.00539 * 2 1 3 14 14 C 1.35756 * 117.00204 * 84.70618 * 13 2 1 15 15 C 1.39018 * 119.89336 * 354.63209 * 14 13 2 16 16 C 1.37688 * 120.12788 * 179.97438 * 15 14 13 17 17 C 1.39793 * 119.91519 * 0.26052 * 16 15 14 18 18 C 1.43198 * 120.10564 * 179.74197 * 17 16 15 19 19 N 7.45524 * 97.37375 * 293.48551 * 2 1 3 20 20 C 1.39875 * 119.79332 * 359.48980 * 17 16 15 21 21 Cl 1.73600 * 120.06723 * 180.25485 * 20 17 16 22 22 C 1.37920 * 119.86584 * 0.50563 * 20 17 16 23 23 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46931 * 299.99616 * 1 2 3 25 25 H 1.08992 * 109.47370 * 59.99429 * 1 2 3 26 26 H 1.09004 * 109.46788 * 304.99931 * 4 2 1 27 27 H 1.09000 * 109.46882 * 64.99768 * 4 2 1 28 28 H 0.97003 * 120.00685 * 180.02562 * 8 7 5 29 29 H 1.07993 * 119.93632 * 359.96340 * 15 14 13 30 30 H 1.08002 * 120.04307 * 179.97438 * 16 15 14 31 31 H 1.07998 * 119.95584 * 179.76868 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1926 2.3582 8 7 5.5412 -1.1002 2.4133 9 14 3.3016 -2.1078 3.6957 10 1 3.1711 -3.5380 3.3177 11 1 4.0449 -2.0003 4.9768 12 1 1.9505 -1.5128 3.8559 13 8 2.0063 -0.6735 -1.1669 14 6 2.1066 0.0605 -2.3045 15 6 1.6481 1.3727 -2.3250 16 6 1.7479 2.1217 -3.4760 17 6 2.3063 1.5593 -4.6275 18 6 2.4071 2.3328 -5.8284 19 7 2.4868 2.9465 -6.7811 20 6 2.7713 0.2404 -4.6016 21 17 3.4722 -0.4629 -6.0256 22 6 2.6672 -0.5019 -3.4439 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8898 26 1 1.6055 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 6.0257 -1.5070 3.1487 29 1 1.2127 1.8054 -1.4365 30 1 1.3909 3.1409 -3.4905 31 1 3.0223 -1.5216 -3.4233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:24 Heat of formation + Delta-G solvation = 1.242582 kcal Electronic energy + Delta-G solvation = -16841.962260 eV Core-core repulsion = 13921.666917 eV Total energy + Delta-G solvation = -2920.295343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31808 -38.22250 -36.60901 -36.13493 -33.69688 -32.06485 -30.96205 -30.21233 -28.16204 -24.11267 -23.27445 -22.76982 -20.36266 -19.11899 -17.97049 -16.87006 -16.26985 -15.38259 -15.01345 -14.57530 -14.30396 -14.12777 -13.92298 -13.50677 -13.03307 -12.85470 -12.76779 -12.48016 -12.25579 -12.11519 -11.95363 -11.87140 -11.33287 -11.17572 -10.96916 -10.80912 -10.31020 -10.01092 -9.75395 -9.35977 -9.05014 -8.63781 -8.19028 -6.12699 -4.12333 0.68262 1.04972 1.81178 2.62216 2.88563 3.23951 3.31315 3.31990 3.46949 3.70562 3.86797 4.35674 4.58035 4.89595 5.00704 5.19427 5.22512 5.31031 5.38325 5.58006 5.67528 5.73756 5.90270 6.01170 6.13480 6.26728 6.34296 6.37415 6.90416 6.98963 7.44038 7.58288 7.70842 8.39984 8.90615 9.47201 11.00466 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027979 B = 0.004571 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.510250 B = 6123.621724 C = 6555.408956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.522 4.522 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.277 6.277 14 C 0.199 3.801 15 C -0.216 4.216 16 C -0.014 4.014 17 C -0.085 4.085 18 C 0.265 3.735 19 N -0.423 5.423 20 C 0.049 3.951 21 Cl -0.053 7.053 22 C -0.154 4.154 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 2.953 -9.329 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.048 4.048 5 C -0.559 4.559 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.705 3.295 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.191 1.191 13 O -0.188 6.188 14 C 0.149 3.851 15 C -0.234 4.234 16 C -0.035 4.035 17 C -0.089 4.089 18 C -0.050 4.050 19 N -0.099 5.099 20 C 0.020 3.980 21 Cl -0.023 7.023 22 C -0.173 4.173 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.480 3.569 -10.755 14.774 hybrid contribution -0.290 -0.688 1.128 1.353 sum -9.770 2.881 -9.626 14.015 Atomic orbital electron populations 1.22478 0.96322 1.03062 1.02149 1.22790 0.92017 0.97486 0.84096 0.90740 1.19759 0.98292 0.96339 0.90417 1.20975 0.89211 1.35957 1.09797 0.90810 1.24986 0.94721 0.95698 0.97798 1.69897 1.06534 1.44960 1.32248 0.86824 0.80301 0.80762 0.81637 1.20141 1.21293 1.19069 1.86288 1.78452 1.38061 1.15971 1.19216 0.88976 0.89670 0.87214 1.21437 1.07460 0.94443 1.00099 1.20865 0.93440 0.99399 0.89763 1.15606 1.11522 0.91744 0.90077 1.25380 0.93518 0.93395 0.92718 1.81201 1.09260 1.09077 1.10373 1.20501 0.97046 0.91696 0.88804 1.98399 1.82281 1.83874 1.37782 1.20180 1.05324 1.02301 0.89538 0.91628 0.90940 0.92647 0.94202 0.95588 0.92585 0.83416 0.84090 0.82985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.16 37.16 0.34 -2.01 16 2 C 0.09 1.54 2.17 -26.73 -0.06 1.48 16 3 H 0.07 1.20 6.31 -51.93 -0.33 0.88 16 4 C -0.01 -0.23 3.75 -27.88 -0.10 -0.34 16 5 C -0.52 -13.81 9.43 -34.44 -0.32 -14.14 16 6 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 13 O -0.28 -4.87 9.54 -18.98 -0.18 -5.05 16 14 C 0.20 2.92 6.60 -39.05 -0.26 2.66 16 15 C -0.22 -2.60 8.20 -39.49 -0.32 -2.92 16 16 C -0.01 -0.15 9.75 -39.20 -0.38 -0.53 16 17 C -0.08 -1.03 5.74 -106.78 -0.61 -1.64 16 18 C 0.26 3.49 14.38 -22.47 -0.32 3.17 16 19 N -0.42 -6.27 18.54 41.84 0.78 -5.49 16 20 C 0.05 0.63 6.35 -39.09 -0.25 0.38 16 21 Cl -0.05 -0.65 28.02 -51.86 -1.45 -2.10 16 22 C -0.15 -2.10 9.75 -39.46 -0.38 -2.48 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.60 6.88 -51.93 -0.36 0.24 16 26 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 27 H 0.03 0.56 7.57 -51.93 -0.39 0.16 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.15 1.58 5.39 -52.49 -0.28 1.30 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -29.59 291.09 -6.16 -35.75 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -3.01 Total: -2.80 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.78 Total: -14.55 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 1.55 Total: -31.34 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.18 Total: -5.05 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.45 Total: -2.10 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.59 -6.16 -35.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.992 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds