Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 C 1.52999 * 109.47073 * 239.99826 * 2 1 3 5 5 C 1.50698 * 109.47183 * 174.99936 * 4 2 1 6 6 H 1.08002 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00145 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00273 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00334 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46747 * 90.00212 * 9 7 5 11 11 H 1.48493 * 109.47406 * 210.00216 * 9 7 5 12 12 H 1.48502 * 109.46814 * 330.00349 * 9 7 5 13 13 O 1.42899 * 109.47387 * 119.99524 * 2 1 3 14 14 C 1.35776 * 117.00152 * 275.14350 * 13 2 1 15 15 C 1.38933 * 119.91254 * 5.46923 * 14 13 2 16 16 C 1.37743 * 120.11451 * 179.72974 * 15 14 13 17 17 C 1.39754 * 119.92277 * 359.97438 * 16 15 14 18 18 C 1.43204 * 120.09064 * 180.02562 * 17 16 15 19 19 N 7.45573 * 97.43038 * 66.52073 * 2 1 3 20 20 C 1.39746 * 119.82107 * 0.02562 * 17 16 15 21 21 C 1.37842 * 119.89041 * 0.02562 * 20 17 16 22 22 Cl 1.73601 * 119.96769 * 179.97438 * 21 20 17 23 23 H 1.08998 * 109.47010 * 59.99980 * 1 2 3 24 24 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46986 * 299.99866 * 1 2 3 26 26 H 1.08998 * 109.47071 * 295.00158 * 4 2 1 27 27 H 1.08997 * 109.47230 * 55.00039 * 4 2 1 28 28 H 0.96997 * 120.00546 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.94290 * 359.74282 * 15 14 13 30 30 H 1.07998 * 120.04096 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.05793 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1936 -2.3577 8 7 3.5764 -1.8379 -3.2994 9 14 6.0920 -1.0612 -2.4369 10 1 6.7009 -2.2132 -1.7245 11 1 6.5290 -1.0698 -3.8560 12 1 6.5260 0.2046 -1.7929 13 8 2.0064 -0.6735 1.1668 14 6 2.1096 0.0614 2.3038 15 6 1.6525 1.3732 2.3248 16 6 1.7501 2.1207 3.4776 17 6 2.3096 1.5580 4.6281 18 6 2.4123 2.3317 5.8287 19 7 2.4942 2.9455 6.7810 20 6 2.7685 0.2382 4.6036 21 6 2.6680 -0.5026 3.4456 22 17 3.2381 -2.1420 3.4128 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0608 -2.2447 -4.0348 29 1 1.2196 1.8075 1.4358 30 1 1.3940 3.1401 3.4928 31 1 3.2019 -0.2003 5.4904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -1.661817 kcal Electronic energy + Delta-G solvation = -16984.694171 eV Core-core repulsion = 14064.272883 eV Total energy + Delta-G solvation = -2920.421287 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27605 -38.05649 -36.53128 -35.95010 -33.63157 -31.87020 -31.02978 -30.03876 -27.58789 -24.16078 -23.17041 -23.05834 -20.36663 -19.09243 -17.86854 -16.48368 -16.18789 -15.14249 -15.03952 -14.57417 -14.49889 -13.98685 -13.94772 -13.49785 -13.01261 -12.91317 -12.57606 -12.27650 -11.99658 -11.95849 -11.57389 -11.45803 -11.23516 -11.03713 -10.81580 -10.68075 -10.51206 -10.18189 -9.53459 -9.21668 -9.03173 -8.44634 -8.06199 -6.07865 -4.09906 0.74735 1.03429 2.21151 2.64392 2.82439 3.30135 3.36662 3.39502 3.45680 3.71136 3.84971 4.41420 4.65767 4.76031 4.94834 5.27504 5.31898 5.42991 5.53720 5.56898 5.70944 5.78340 5.94779 6.06946 6.07539 6.38036 6.47392 6.56786 7.31080 7.40114 7.45714 7.80518 7.87737 8.25871 8.93210 9.54424 11.03395 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.005446 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.214758 B = 5140.560474 C = 5438.955162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 H 0.069 0.931 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 O -0.268 6.268 14 C 0.195 3.805 15 C -0.211 4.211 16 C -0.021 4.021 17 C -0.084 4.084 18 C 0.269 3.731 19 N -0.433 5.433 20 C -0.023 4.023 21 C -0.085 4.085 22 Cl -0.044 7.044 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.137 0.863 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 4.396 11.023 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.026 3.974 3 H 0.086 0.914 4 C -0.010 4.010 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 O -0.178 6.178 14 C 0.144 3.856 15 C -0.230 4.230 16 C -0.042 4.042 17 C -0.088 4.088 18 C -0.046 4.046 19 N -0.109 5.109 20 C -0.044 4.044 21 C -0.113 4.113 22 Cl -0.015 7.015 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.937 4.879 12.247 14.077 hybrid contribution 1.008 -0.208 -0.611 1.197 sum -3.930 4.671 11.636 13.140 Atomic orbital electron populations 1.22438 0.96411 1.03042 1.01783 1.23107 0.92219 0.97377 0.84681 0.91352 1.19280 0.96731 0.96630 0.88399 1.21076 0.91503 1.34805 1.08092 0.92566 1.24947 0.98439 0.95113 0.95599 1.69937 1.35641 1.35778 1.12088 0.86604 0.85741 0.78652 0.77130 1.20515 1.21239 1.19842 1.86398 1.77934 1.37638 1.15833 1.19220 0.89241 0.89955 0.87194 1.21311 1.07617 0.93748 1.00287 1.20982 0.93463 0.99436 0.90271 1.15601 1.10914 0.93012 0.89274 1.25520 0.93165 0.93238 0.92676 1.81239 1.09767 1.09087 1.10821 1.20772 0.95528 0.91499 0.96578 1.19959 1.08103 0.89473 0.93744 1.98392 1.87448 1.17031 1.98643 0.90972 0.91604 0.93097 0.95068 0.94085 0.92865 0.83177 0.84519 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.17 37.16 0.34 -2.23 16 2 C 0.08 1.46 2.17 -26.73 -0.06 1.40 16 3 H 0.07 1.15 6.30 -51.93 -0.33 0.83 16 4 C 0.03 0.62 4.68 -27.88 -0.13 0.49 16 5 C -0.52 -13.72 8.88 -34.44 -0.31 -14.02 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 O -0.27 -4.94 8.99 -19.04 -0.17 -5.12 16 14 C 0.20 2.96 6.60 -39.02 -0.26 2.70 16 15 C -0.21 -2.58 8.21 -39.50 -0.32 -2.90 16 16 C -0.02 -0.21 9.75 -39.20 -0.38 -0.60 16 17 C -0.08 -0.92 5.74 -106.84 -0.61 -1.54 16 18 C 0.27 3.20 15.33 -22.47 -0.34 2.86 16 19 N -0.43 -6.00 18.54 41.83 0.78 -5.23 16 20 C -0.02 -0.26 9.53 -39.16 -0.37 -0.63 16 21 C -0.09 -1.20 6.32 -39.42 -0.25 -1.45 16 22 Cl -0.04 -0.66 28.49 -51.86 -1.48 -2.14 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.61 6.89 -51.93 -0.36 0.25 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.15 1.67 5.40 -52.49 -0.28 1.39 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -29.28 295.33 -6.55 -35.83 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -3.05 Total: -4.60 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.80 Total: -14.35 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 1.51 Total: -30.21 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.17 Total: -5.12 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.28 -6.55 -35.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.170 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds