Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 C 1.52999 * 109.47073 * 239.99826 * 2 1 3 5 5 C 1.50698 * 109.47183 * 174.99936 * 4 2 1 6 6 H 1.08002 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00145 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00273 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00334 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46747 * 90.00212 * 9 7 5 11 11 H 1.48493 * 109.47406 * 210.00216 * 9 7 5 12 12 H 1.48502 * 109.46814 * 330.00349 * 9 7 5 13 13 O 1.42899 * 109.47387 * 119.99524 * 2 1 3 14 14 C 1.35776 * 117.00152 * 275.14350 * 13 2 1 15 15 C 1.38933 * 119.91254 * 5.46923 * 14 13 2 16 16 C 1.37743 * 120.11451 * 179.72974 * 15 14 13 17 17 C 1.39754 * 119.92277 * 359.97438 * 16 15 14 18 18 C 1.43204 * 120.09064 * 180.02562 * 17 16 15 19 19 N 7.45573 * 97.43038 * 66.52073 * 2 1 3 20 20 C 1.39746 * 119.82107 * 0.02562 * 17 16 15 21 21 C 1.37842 * 119.89041 * 0.02562 * 20 17 16 22 22 Cl 1.73601 * 119.96769 * 179.97438 * 21 20 17 23 23 H 1.08998 * 109.47010 * 59.99980 * 1 2 3 24 24 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46986 * 299.99866 * 1 2 3 26 26 H 1.08998 * 109.47071 * 295.00158 * 4 2 1 27 27 H 1.08997 * 109.47230 * 55.00039 * 4 2 1 28 28 H 0.96997 * 120.00546 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.94290 * 359.74282 * 15 14 13 30 30 H 1.07998 * 120.04096 * 180.02562 * 16 15 14 31 31 H 1.08001 * 120.05793 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1936 -2.3577 8 7 3.5764 -1.8379 -3.2994 9 14 6.0920 -1.0612 -2.4369 10 1 6.7009 -2.2132 -1.7245 11 1 6.5290 -1.0698 -3.8560 12 1 6.5260 0.2046 -1.7929 13 8 2.0064 -0.6735 1.1668 14 6 2.1096 0.0614 2.3038 15 6 1.6525 1.3732 2.3248 16 6 1.7501 2.1207 3.4776 17 6 2.3096 1.5580 4.6281 18 6 2.4123 2.3317 5.8287 19 7 2.4942 2.9455 6.7810 20 6 2.7685 0.2382 4.6036 21 6 2.6680 -0.5026 3.4456 22 17 3.2381 -2.1420 3.4128 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0608 -2.2447 -4.0348 29 1 1.2196 1.8075 1.4358 30 1 1.3940 3.1401 3.4928 31 1 3.2019 -0.2003 5.4904 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839120.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -17.116228 kcal Electronic energy + Delta-G solvation = -16985.364324 eV Core-core repulsion = 14064.272883 eV Total energy + Delta-G solvation = -2921.091441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38555 -39.19427 -37.61496 -37.01441 -35.42690 -33.48163 -32.01666 -31.11835 -29.31478 -25.49881 -24.65628 -24.11816 -21.75735 -20.07561 -19.08107 -18.47836 -17.34377 -16.51255 -16.26220 -16.04954 -15.58881 -15.09841 -14.99851 -14.65736 -14.37177 -13.97585 -13.86318 -13.71340 -13.32286 -13.27929 -13.19711 -12.85360 -12.63366 -12.38855 -12.30653 -12.11623 -11.82611 -11.68313 -11.26411 -11.03877 -10.54475 -9.99454 -9.17051 -8.17042 -6.24660 -0.23987 0.09872 1.15821 1.41241 1.43116 1.52224 1.67472 1.83507 2.27352 2.43340 2.76278 2.86959 3.18842 3.73159 3.83510 4.01675 4.11503 4.27522 4.34728 4.51443 4.66037 4.74118 4.89745 5.02100 5.12825 5.19414 5.29227 5.37835 5.49851 5.58543 5.81692 6.21852 6.44469 6.52034 6.87912 7.43111 8.94525 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020702 B = 0.005446 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.214758 B = 5140.560474 C = 5438.955162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.081 0.919 4 C 0.028 3.972 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.263 1.263 13 O -0.300 6.300 14 C 0.168 3.832 15 C -0.207 4.207 16 C -0.003 4.003 17 C -0.074 4.074 18 C 0.291 3.709 19 N -0.463 5.463 20 C -0.013 4.013 21 C -0.099 4.099 22 Cl -0.063 7.063 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.080 0.920 26 H -0.003 1.003 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 6.318 12.364 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.009 4.009 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.187 1.187 13 O -0.211 6.211 14 C 0.118 3.882 15 C -0.226 4.226 16 C -0.023 4.023 17 C -0.078 4.078 18 C -0.023 4.023 19 N -0.139 5.139 20 C -0.034 4.034 21 C -0.127 4.127 22 Cl -0.034 7.034 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.189 0.811 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.976 6.817 13.610 16.015 hybrid contribution 1.003 -0.766 -0.929 1.567 sum -3.973 6.051 12.681 14.602 Atomic orbital electron populations 1.22351 0.93587 1.02989 1.03795 1.22788 0.94301 0.96641 0.82823 0.90081 1.19123 0.95345 0.95224 0.91244 1.21473 0.93292 1.33952 1.07562 0.92665 1.25759 1.02794 0.95064 0.95514 1.70051 1.37288 1.37023 1.12828 0.85661 0.80645 0.78830 0.77261 1.20551 1.20748 1.18735 1.86308 1.79224 1.38844 1.16765 1.19515 0.91072 0.91220 0.86390 1.21458 1.07129 0.92505 1.01475 1.21303 0.91583 1.00568 0.88864 1.15616 1.10449 0.92567 0.89217 1.25418 0.92207 0.92469 0.92210 1.81285 1.10779 1.10160 1.11713 1.20927 0.94652 0.91479 0.96305 1.20110 1.09091 0.88990 0.94479 1.98382 1.87758 1.18589 1.98708 0.89833 0.92757 0.90081 0.98430 0.95397 0.92874 0.81841 0.81065 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 9.17 71.98 0.66 -3.96 16 2 C 0.09 3.17 2.17 30.59 0.07 3.23 16 3 H 0.08 2.61 6.30 -2.39 -0.02 2.59 16 4 C 0.03 1.33 4.68 29.85 0.14 1.47 16 5 C -0.52 -28.24 8.88 25.60 0.23 -28.02 16 6 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 7 C 0.01 0.36 5.46 84.65 0.46 0.83 16 8 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 9 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 O -0.30 -11.00 8.99 -91.04 -0.82 -11.82 16 14 C 0.17 4.83 6.60 22.63 0.15 4.98 16 15 C -0.21 -4.40 8.21 22.32 0.18 -4.22 16 16 C 0.00 -0.05 9.75 22.52 0.22 0.17 16 17 C -0.07 -1.38 5.74 -21.30 -0.12 -1.50 16 18 C 0.29 6.00 15.33 88.33 1.35 7.35 16 19 N -0.46 -11.65 18.54 19.00 0.35 -11.30 16 20 C -0.01 -0.26 9.53 22.54 0.21 -0.04 16 21 C -0.10 -2.66 6.32 22.37 0.14 -2.52 16 22 Cl -0.06 -1.90 28.49 -2.72 -0.08 -1.97 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.70 6.89 -2.39 -0.02 1.69 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.16 3.03 5.40 -2.91 -0.02 3.01 16 30 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -64.37 295.33 6.62 -57.75 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: 1.16 Total: -1.61 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 3.70 Total: -22.22 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: 0.64 Total: -65.74 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.82 Total: -11.82 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.97 kcal Total: -64.37 6.62 -57.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839120.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.636 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds