Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.53008 * 109.47085 * 119.99551 * 2 1 3 5 5 C 1.50699 * 109.46888 * 184.99984 * 4 2 1 6 6 H 1.08005 * 120.00372 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99971 * 179.72405 * 5 4 2 8 8 N 1.31510 * 120.00211 * 180.27572 * 7 5 4 9 9 Si 1.86803 * 119.99807 * 0.27605 * 7 5 4 10 10 H 1.48503 * 109.46949 * 89.99999 * 9 7 5 11 11 H 1.48503 * 109.47022 * 209.99901 * 9 7 5 12 12 H 1.48497 * 109.47014 * 330.00070 * 9 7 5 13 13 O 1.42892 * 109.47169 * 239.99710 * 2 1 3 14 14 C 1.35783 * 117.00219 * 84.90326 * 13 2 1 15 15 C 1.38937 * 119.90428 * 354.53076 * 14 13 2 16 16 C 1.37742 * 120.10664 * 179.97438 * 15 14 13 17 17 C 1.39760 * 119.92505 * 0.02562 * 16 15 14 18 18 C 1.43199 * 120.09080 * 180.02562 * 17 16 15 19 19 N 7.45535 * 97.63819 * 293.56320 * 2 1 3 20 20 C 1.39743 * 119.82017 * 0.02562 * 17 16 15 21 21 C 1.37853 * 119.88939 * 359.70615 * 20 17 16 22 22 Cl 1.73602 * 119.96273 * 180.31103 * 21 20 17 23 23 H 1.09004 * 109.47478 * 300.00103 * 1 2 3 24 24 H 1.09001 * 109.47483 * 60.00207 * 1 2 3 25 25 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46857 * 65.00282 * 4 2 1 27 27 H 1.09000 * 109.47225 * 305.00014 * 4 2 1 28 28 H 0.97000 * 120.00226 * 180.02562 * 8 7 5 29 29 H 1.07994 * 119.94737 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.04052 * 180.02562 * 16 15 14 31 31 H 1.08007 * 120.05743 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2299 -1.1880 2.3612 8 7 5.5401 -1.0906 2.4194 9 14 3.3010 -2.1031 3.6988 10 1 3.1757 -3.5345 3.3239 11 1 4.0412 -1.9902 4.9813 12 1 1.9477 -1.5119 3.8547 13 8 2.0063 -0.6737 -1.1667 14 6 2.1104 0.0613 -2.3036 15 6 1.6541 1.3735 -2.3244 16 6 1.7582 2.1230 -3.4753 17 6 2.3234 1.5621 -4.6239 18 6 2.4338 2.3383 -5.8222 19 7 2.5209 2.9539 -6.7731 20 6 2.7804 0.2418 -4.5999 21 6 2.6775 -0.4998 -3.4423 22 17 3.2520 -2.1376 -3.4080 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7714 1.2057 27 1 1.6054 -0.2616 2.1371 28 1 6.0242 -1.4941 3.1567 29 1 1.2179 1.8067 -1.4366 30 1 1.4035 3.1430 -3.4902 31 1 3.2174 -0.1957 -5.4854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = 2.837853 kcal Electronic energy + Delta-G solvation = -16995.441885 eV Core-core repulsion = 14075.215718 eV Total energy + Delta-G solvation = -2920.226167 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30034 -38.09151 -36.52027 -35.93945 -33.65949 -31.96788 -31.04771 -30.07609 -28.13937 -24.19617 -23.15436 -22.80158 -20.31699 -19.08405 -17.93977 -16.83415 -16.23177 -15.19007 -15.06204 -14.53831 -14.46501 -13.98288 -13.90209 -13.50227 -12.94528 -12.92742 -12.78159 -12.36660 -12.24859 -12.07506 -11.86578 -11.63146 -11.25667 -11.07808 -10.81360 -10.67283 -10.28408 -9.99303 -9.73296 -9.32107 -9.02726 -8.60102 -8.07758 -6.09090 -4.08157 0.75055 1.04329 2.22722 2.65687 2.82952 3.26456 3.33400 3.33943 3.41097 3.72253 3.85703 4.38794 4.65675 4.75630 4.94272 5.22304 5.28670 5.34354 5.40866 5.55005 5.66697 5.70951 5.90515 6.00432 6.06874 6.28114 6.38290 6.39915 6.92900 7.01296 7.41128 7.60164 7.71437 8.43739 8.94554 9.50964 11.04177 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.005236 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.320832 B = 5345.937082 C = 5684.605265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.266 1.266 13 O -0.268 6.268 14 C 0.195 3.805 15 C -0.210 4.210 16 C -0.021 4.021 17 C -0.082 4.082 18 C 0.268 3.732 19 N -0.432 5.432 20 C -0.023 4.023 21 C -0.082 4.082 22 Cl -0.043 7.043 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.264 0.736 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 2.774 -9.236 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.047 4.047 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.704 3.296 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.191 1.191 13 O -0.178 6.178 14 C 0.144 3.856 15 C -0.229 4.229 16 C -0.042 4.042 17 C -0.086 4.086 18 C -0.046 4.046 19 N -0.108 5.108 20 C -0.044 4.044 21 C -0.110 4.110 22 Cl -0.014 7.014 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.462 3.307 -10.517 14.528 hybrid contribution -0.325 -0.735 1.249 1.485 sum -9.786 2.571 -9.268 13.721 Atomic orbital electron populations 1.22474 0.96321 1.03074 1.02091 1.22803 0.92026 0.97462 0.84207 0.90779 1.19751 0.98324 0.96342 0.90316 1.20960 0.89180 1.35923 1.09566 0.90819 1.24972 0.94708 0.95706 0.97774 1.69899 1.06554 1.45106 1.32119 0.86842 0.80308 0.80822 0.81658 1.20157 1.21334 1.19089 1.86367 1.78159 1.37511 1.15807 1.19167 0.89450 0.89954 0.87018 1.21291 1.07654 0.93642 1.00283 1.20977 0.93500 0.99439 0.90272 1.15606 1.10688 0.92929 0.89368 1.25515 0.93179 0.93246 0.92675 1.81244 1.09723 1.09074 1.10803 1.20783 0.95518 0.91494 0.96595 1.19954 1.07621 0.89653 0.93770 1.98394 1.87277 1.17073 1.98629 0.90960 0.92690 0.91613 0.95576 0.94257 0.92649 0.83221 0.84486 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.16 37.16 0.34 -2.06 16 2 C 0.09 1.56 2.17 -26.73 -0.06 1.50 16 3 H 0.07 1.22 6.30 -51.93 -0.33 0.89 16 4 C -0.01 -0.22 3.75 -27.88 -0.10 -0.33 16 5 C -0.52 -13.91 9.43 -34.44 -0.32 -14.24 16 6 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 9 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 13 O -0.27 -4.88 8.99 -19.06 -0.17 -5.05 16 14 C 0.20 2.96 6.60 -39.03 -0.26 2.70 16 15 C -0.21 -2.56 8.21 -39.50 -0.32 -2.88 16 16 C -0.02 -0.22 9.75 -39.19 -0.38 -0.60 16 17 C -0.08 -0.91 5.74 -106.84 -0.61 -1.52 16 18 C 0.27 3.24 15.33 -22.47 -0.34 2.89 16 19 N -0.43 -6.05 18.54 41.84 0.78 -5.28 16 20 C -0.02 -0.26 9.53 -39.16 -0.37 -0.64 16 21 C -0.08 -1.18 6.32 -39.43 -0.25 -1.43 16 22 Cl -0.04 -0.65 28.49 -51.86 -1.48 -2.13 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.61 6.90 -51.93 -0.36 0.25 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.57 7.58 -51.93 -0.39 0.18 16 27 H 0.04 0.82 7.19 -51.93 -0.37 0.45 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.15 1.63 5.40 -52.49 -0.28 1.34 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -30.29 291.73 -6.17 -36.46 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -3.01 Total: -3.54 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.79 Total: -14.74 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 1.55 Total: -31.41 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.17 Total: -5.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.29 -6.17 -36.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds