Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47042 * 2 1 4 4 C 1.53008 * 109.47085 * 119.99551 * 2 1 3 5 5 C 1.50699 * 109.46888 * 184.99984 * 4 2 1 6 6 H 1.08005 * 120.00372 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99971 * 179.72405 * 5 4 2 8 8 N 1.31510 * 120.00211 * 180.27572 * 7 5 4 9 9 Si 1.86803 * 119.99807 * 0.27605 * 7 5 4 10 10 H 1.48503 * 109.46949 * 89.99999 * 9 7 5 11 11 H 1.48503 * 109.47022 * 209.99901 * 9 7 5 12 12 H 1.48497 * 109.47014 * 330.00070 * 9 7 5 13 13 O 1.42892 * 109.47169 * 239.99710 * 2 1 3 14 14 C 1.35783 * 117.00219 * 84.90326 * 13 2 1 15 15 C 1.38937 * 119.90428 * 354.53076 * 14 13 2 16 16 C 1.37742 * 120.10664 * 179.97438 * 15 14 13 17 17 C 1.39760 * 119.92505 * 0.02562 * 16 15 14 18 18 C 1.43199 * 120.09080 * 180.02562 * 17 16 15 19 19 N 7.45535 * 97.63819 * 293.56320 * 2 1 3 20 20 C 1.39743 * 119.82017 * 0.02562 * 17 16 15 21 21 C 1.37853 * 119.88939 * 359.70615 * 20 17 16 22 22 Cl 1.73602 * 119.96273 * 180.31103 * 21 20 17 23 23 H 1.09004 * 109.47478 * 300.00103 * 1 2 3 24 24 H 1.09001 * 109.47483 * 60.00207 * 1 2 3 25 25 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46857 * 65.00282 * 4 2 1 27 27 H 1.09000 * 109.47225 * 305.00014 * 4 2 1 28 28 H 0.97000 * 120.00226 * 180.02562 * 8 7 5 29 29 H 1.07994 * 119.94737 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.04052 * 180.02562 * 16 15 14 31 31 H 1.08007 * 120.05743 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2299 -1.1880 2.3612 8 7 5.5401 -1.0906 2.4194 9 14 3.3010 -2.1031 3.6988 10 1 3.1757 -3.5345 3.3239 11 1 4.0412 -1.9902 4.9813 12 1 1.9477 -1.5119 3.8547 13 8 2.0063 -0.6737 -1.1667 14 6 2.1104 0.0613 -2.3036 15 6 1.6541 1.3735 -2.3244 16 6 1.7582 2.1230 -3.4753 17 6 2.3234 1.5621 -4.6239 18 6 2.4338 2.3383 -5.8222 19 7 2.5209 2.9539 -6.7731 20 6 2.7804 0.2418 -4.5999 21 6 2.6775 -0.4998 -3.4423 22 17 3.2520 -2.1376 -3.4080 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -1.7714 1.2057 27 1 1.6054 -0.2616 2.1371 28 1 6.0242 -1.4941 3.1567 29 1 1.2179 1.8067 -1.4366 30 1 1.4035 3.1430 -3.4902 31 1 3.2174 -0.1957 -5.4854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839121.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = -14.484870 kcal Electronic energy + Delta-G solvation = -16996.193055 eV Core-core repulsion = 14075.215718 eV Total energy + Delta-G solvation = -2920.977337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40041 -39.21442 -37.62503 -37.02438 -35.37830 -33.65392 -32.04692 -31.16020 -29.75394 -25.40142 -24.39306 -24.13475 -21.70426 -20.08528 -19.16198 -18.83015 -17.36841 -16.46166 -16.21656 -16.02192 -15.61616 -15.11182 -15.00010 -14.74363 -14.45205 -14.08897 -13.96554 -13.87155 -13.44992 -13.32589 -13.24722 -12.85727 -12.53271 -12.31177 -12.21003 -11.89553 -11.77652 -11.63974 -11.33734 -11.20993 -10.71671 -10.00489 -9.18252 -8.22500 -6.25666 -0.25233 0.08718 1.14793 1.40867 1.41729 1.51980 1.66278 1.81991 2.25619 2.40602 2.75378 2.85862 3.14558 3.71642 3.81913 4.00507 4.07111 4.22938 4.32490 4.48066 4.64778 4.72928 4.90138 4.99002 5.09026 5.12580 5.20230 5.25482 5.40799 5.49810 5.67919 6.29058 6.43025 6.48860 6.80961 7.37106 8.94406 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.005236 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.320832 B = 5345.937082 C = 5684.605265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.077 0.923 4 C -0.013 4.013 5 C -0.517 4.517 6 H 0.030 0.970 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.235 1.235 13 O -0.301 6.301 14 C 0.168 3.832 15 C -0.207 4.207 16 C -0.004 4.004 17 C -0.074 4.074 18 C 0.291 3.709 19 N -0.462 5.462 20 C -0.014 4.014 21 C -0.100 4.100 22 Cl -0.063 7.063 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.166 0.834 30 H 0.173 0.827 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 3.775 -9.241 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.050 4.050 5 C -0.555 4.555 6 H 0.049 0.951 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.158 1.158 13 O -0.213 6.213 14 C 0.119 3.881 15 C -0.225 4.225 16 C -0.024 4.024 17 C -0.078 4.078 18 C -0.023 4.023 19 N -0.138 5.138 20 C -0.035 4.035 21 C -0.127 4.127 22 Cl -0.034 7.034 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.972 4.325 -10.545 16.530 hybrid contribution 0.509 -0.963 1.109 1.554 sum -11.463 3.362 -9.436 15.223 Atomic orbital electron populations 1.22386 0.92754 1.03550 1.04172 1.22689 0.94648 0.96572 0.82592 0.90494 1.19728 0.94641 0.96975 0.93624 1.21299 0.92141 1.34247 1.07828 0.95114 1.25959 0.95495 0.97010 1.00782 1.70074 1.08698 1.47226 1.33413 0.85741 0.80216 0.79243 0.77929 1.20051 1.21454 1.15768 1.86283 1.79387 1.38800 1.16784 1.19481 0.91070 0.91250 0.86340 1.21471 1.07177 0.92393 1.01491 1.21316 0.91628 1.00591 0.88893 1.15622 1.10377 0.92472 0.89378 1.25413 0.92221 0.92483 0.92206 1.81285 1.10753 1.10141 1.11669 1.20936 0.94714 0.91542 0.96334 1.20133 1.08782 0.89165 0.94661 1.98380 1.87633 1.18721 1.98702 0.89145 0.90300 0.91962 0.95894 0.92672 0.92774 0.81657 0.80994 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.16 71.98 0.66 -3.33 16 2 C 0.09 2.98 2.17 30.60 0.07 3.05 16 3 H 0.08 2.43 6.30 -2.38 -0.02 2.42 16 4 C -0.01 -0.53 3.75 29.85 0.11 -0.42 16 5 C -0.52 -28.32 9.43 25.60 0.24 -28.08 16 6 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 7 C 0.00 0.22 5.47 84.66 0.46 0.68 16 8 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 9 Si 0.94 42.48 27.47 68.60 1.88 44.37 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.23 -9.27 6.54 99.48 0.65 -8.62 16 13 O -0.30 -10.89 8.99 -91.12 -0.82 -11.71 16 14 C 0.17 4.97 6.60 22.63 0.15 5.12 16 15 C -0.21 -4.52 8.21 22.32 0.18 -4.34 16 16 C 0.00 -0.07 9.75 22.52 0.22 0.15 16 17 C -0.07 -1.46 5.74 -21.30 -0.12 -1.58 16 18 C 0.29 6.27 15.33 88.33 1.35 7.63 16 19 N -0.46 -12.00 18.54 19.00 0.35 -11.65 16 20 C -0.01 -0.31 9.53 22.54 0.21 -0.10 16 21 C -0.10 -2.81 6.32 22.37 0.14 -2.66 16 22 Cl -0.06 -1.98 28.49 -2.72 -0.08 -2.05 16 23 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.08 1.46 6.90 -2.39 -0.02 1.44 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.02 0.98 7.58 -2.39 -0.02 0.96 16 27 H 0.06 2.16 7.19 -2.39 -0.02 2.14 16 28 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.17 3.06 5.40 -2.91 -0.02 3.04 16 30 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -68.20 291.73 6.42 -61.78 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.10 Total: 1.94 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.68 Total: -23.88 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: 0.65 Total: -70.44 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.82 Total: -11.71 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.37 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.05 kcal Total: -68.20 6.42 -61.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839121.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.296 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds