Wall clock time and date at job start Mon Mar 30 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47305 * 2 1 4 4 C 1.53001 * 109.47170 * 120.00294 * 2 1 3 5 5 C 1.50699 * 109.47302 * 185.00293 * 4 2 1 6 6 H 1.07999 * 119.99703 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99960 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00095 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00064 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47237 * 89.99822 * 9 7 5 11 11 H 1.48502 * 109.47145 * 209.99991 * 9 7 5 12 12 H 1.48509 * 109.46839 * 329.99904 * 9 7 5 13 13 O 1.42906 * 109.47268 * 240.00071 * 2 1 3 14 14 C 1.35913 * 117.00048 * 85.08887 * 13 2 1 15 15 C 1.38831 * 119.97178 * 174.57675 * 14 13 2 16 16 C 1.38366 * 120.23737 * 180.02562 * 15 14 13 17 17 Cl 1.73598 * 119.90938 * 179.97438 * 16 15 14 18 18 C 1.38121 * 120.18407 * 0.02562 * 16 15 14 19 19 C 1.39615 * 119.94120 * 359.97438 * 18 16 15 20 20 C 1.43208 * 120.11317 * 179.97438 * 19 18 16 21 21 N 5.80266 * 84.22385 * 322.09490 * 2 1 3 22 22 C 1.38444 * 119.97126 * 354.30149 * 14 13 2 23 23 H 1.08995 * 109.47272 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47553 * 300.00425 * 1 2 3 25 25 H 1.09004 * 109.46779 * 59.99965 * 1 2 3 26 26 H 1.09005 * 109.46866 * 304.99855 * 4 2 1 27 27 H 1.09002 * 109.47039 * 64.99794 * 4 2 1 28 28 H 0.97006 * 120.00036 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.88609 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.02790 * 179.97438 * 18 16 15 31 31 H 1.08003 * 120.09621 * 0.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0861 0.5393 7 6 4.2303 -1.1927 2.3584 8 7 5.5410 -1.1003 2.4136 9 14 3.3012 -2.1068 3.6966 10 1 3.1695 -3.5370 3.3193 11 1 4.0449 -1.9991 4.9774 12 1 1.9504 -1.5107 3.8569 13 8 2.0063 -0.6736 -1.1668 14 6 2.1143 0.0631 -2.3038 15 6 2.6756 -0.4977 -3.4430 16 6 2.7887 0.2475 -4.6033 17 17 3.4926 -0.4621 -6.0227 18 6 2.3441 1.5548 -4.6352 19 6 1.7783 2.1264 -3.4939 20 6 1.3166 3.4816 -3.5227 21 7 0.9460 4.5552 -3.5468 22 6 1.6592 1.3704 -2.3267 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6053 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2055 28 1 6.0253 -1.5071 3.1490 29 1 3.0253 -1.5194 -3.4235 30 1 2.4339 2.1343 -5.5421 31 1 1.2187 1.8061 -1.4420 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839206.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:29 Heat of formation + Delta-G solvation = -14.255864 kcal Electronic energy + Delta-G solvation = -16886.057186 eV Core-core repulsion = 13965.089780 eV Total energy + Delta-G solvation = -2920.967406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.43867 -39.23702 -37.86895 -37.09748 -35.38580 -33.72510 -32.24090 -30.96179 -29.78620 -25.34103 -25.11137 -23.88772 -21.58052 -20.57063 -18.90814 -18.01087 -17.38957 -17.17364 -16.44695 -16.14349 -15.89140 -15.19345 -14.92956 -14.63100 -14.36908 -14.13123 -14.09739 -13.98275 -13.59048 -13.49542 -13.11680 -12.90179 -12.57074 -12.44950 -12.15638 -12.05231 -11.83424 -11.67528 -11.36917 -11.22634 -10.73324 -9.97860 -9.31501 -8.24380 -6.28212 -0.46846 0.10733 0.90301 1.40791 1.41528 1.48639 1.52187 1.74952 2.36548 2.40137 2.62909 2.67733 3.12478 3.79862 3.91497 3.93653 3.99530 4.10092 4.20991 4.37898 4.43973 4.82108 4.92822 4.98810 5.00491 5.06151 5.12185 5.19012 5.35688 5.42231 5.65576 6.27316 6.28102 6.50313 6.78476 7.34818 8.92424 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019313 B = 0.005169 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.480467 B = 5416.046129 C = 6173.234615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.068 0.932 4 C -0.013 4.013 5 C -0.522 4.522 6 H 0.031 0.969 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.238 1.238 13 O -0.308 6.308 14 C 0.143 3.857 15 C -0.124 4.124 16 C 0.003 3.997 17 Cl -0.044 7.044 18 C -0.096 4.096 19 C 0.023 3.977 20 C 0.282 3.718 21 N -0.442 5.442 22 C -0.162 4.162 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 1.590 -13.164 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.050 4.050 5 C -0.560 4.560 6 H 0.049 0.951 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.161 1.161 13 O -0.221 6.221 14 C 0.096 3.904 15 C -0.144 4.144 16 C -0.024 4.024 17 Cl -0.014 7.014 18 C -0.117 4.117 19 C 0.019 3.981 20 C -0.033 4.033 21 N -0.117 5.117 22 C -0.183 4.183 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.628 2.948 -13.181 17.187 hybrid contribution 0.577 -0.792 0.757 1.238 sum -10.050 2.156 -12.424 16.125 Atomic orbital electron populations 1.22389 0.93041 1.03796 1.03770 1.22597 0.94454 0.96267 0.83003 0.91421 1.19729 0.94666 0.97172 0.93412 1.21314 0.92124 1.34348 1.08179 0.95106 1.25987 0.95542 0.96996 1.00780 1.70075 1.08662 1.47048 1.33553 0.85701 0.80014 0.79368 0.77812 1.19567 1.21463 1.16058 1.86242 1.80666 1.38456 1.16740 1.18824 0.94028 0.90175 0.87423 1.20611 1.01595 1.02312 0.89927 1.20242 1.00046 0.93426 0.88714 1.98393 1.82201 1.83653 1.37200 1.21028 0.98602 0.93428 0.98633 1.15378 1.02220 0.85802 0.94669 1.25438 0.92790 0.92290 0.92827 1.81274 1.09811 1.12287 1.08337 1.21505 1.04103 0.93613 0.99113 0.91263 0.89460 0.90921 0.92915 0.95349 0.92672 0.83379 0.81474 0.83132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 9.17 71.98 0.66 -3.66 16 2 C 0.09 3.18 2.17 30.59 0.07 3.25 16 3 H 0.07 2.32 6.31 -2.39 -0.02 2.31 16 4 C -0.01 -0.54 3.75 29.85 0.11 -0.43 16 5 C -0.52 -28.73 9.43 25.60 0.24 -28.49 16 6 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 7 C 0.00 0.19 5.47 84.66 0.46 0.66 16 8 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 9 Si 0.95 42.36 27.47 68.60 1.88 44.25 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 13 O -0.31 -11.13 9.55 -92.57 -0.88 -12.02 16 14 C 0.14 4.22 6.60 22.46 0.15 4.37 16 15 C -0.12 -3.25 9.76 22.44 0.22 -3.03 16 16 C 0.00 0.06 6.31 22.27 0.14 0.20 16 17 Cl -0.04 -0.84 28.95 -2.72 -0.08 -0.92 16 18 C -0.10 -1.84 9.53 22.57 0.22 -1.63 16 19 C 0.02 0.51 5.73 -21.38 -0.12 0.39 16 20 C 0.28 6.67 15.33 88.33 1.35 8.03 16 21 N -0.44 -12.14 18.54 19.01 0.35 -11.79 16 22 C -0.16 -4.11 7.95 22.64 0.18 -3.93 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 1.54 6.91 -2.38 -0.02 1.52 16 26 H 0.05 2.11 7.20 -2.38 -0.02 2.10 16 27 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 28 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 29 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.15 3.62 5.41 -2.91 -0.02 3.60 16 Total: -1.00 -64.93 292.50 6.35 -58.58 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.10 Total: 4.78 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.68 Total: -24.29 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: 0.65 Total: -70.38 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.88 Total: -12.02 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.25 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -64.93 6.35 -58.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839206.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.323 kcal (2) G-P(sol) polarization free energy of solvation -64.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds