Wall clock time and date at job start Mon Mar 30 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47138 * 239.99729 * 3 2 1 5 5 H 1.48498 * 109.47384 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47348 * 120.00126 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99845 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46543 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99311 * 180.02562 * 10 9 7 12 12 O 1.21692 * 120.00766 * 359.97438 * 11 10 9 13 13 C 1.46438 * 119.99653 * 179.97438 * 11 10 9 14 14 C 1.34800 * 120.00140 * 187.17031 * 13 11 10 15 15 C 1.47220 * 119.99859 * 11.19923 * 14 13 11 16 16 C 1.39857 * 120.16116 * 42.68124 * 15 14 13 17 17 C 1.37872 * 119.84925 * 179.97438 * 16 15 14 18 18 C 1.38404 * 120.18961 * 0.02562 * 17 16 15 19 19 C 1.38492 * 120.32753 * 359.74636 * 18 17 16 20 20 Cl 1.73594 * 119.92599 * 180.25734 * 19 18 17 21 21 C 1.38034 * 120.14369 * 0.50376 * 19 18 17 22 22 H 0.96991 * 119.99666 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47277 * 60.00067 * 9 7 2 24 24 H 1.08999 * 109.46968 * 299.99476 * 9 7 2 25 25 H 0.96995 * 120.00223 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.99573 * 7.17354 * 13 11 10 27 27 H 1.08000 * 120.00078 * 191.19360 * 14 13 11 28 28 H 1.07995 * 120.07316 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.90204 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.83361 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.09036 * 179.77217 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5574 -5.1058 0.0006 13 6 2.7054 -5.9964 0.0021 14 6 2.2632 -7.2614 -0.1439 15 6 0.8699 -7.5120 -0.5482 16 6 0.2825 -6.7440 -1.5586 17 6 -1.0226 -6.9845 -1.9325 18 6 -1.7520 -7.9828 -1.3105 19 6 -1.1764 -8.7510 -0.3123 20 17 -2.0987 -10.0048 0.4563 21 6 0.1276 -8.5185 0.0764 22 1 -0.4849 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.7616 -5.8037 0.1197 27 1 2.9309 -8.0910 0.0356 28 1 0.8501 -5.9648 -2.0455 29 1 -1.4769 -6.3922 -2.7130 30 1 -2.7738 -8.1666 -1.6082 31 1 0.5744 -9.1156 0.8575 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700866899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:46 Heat of formation + Delta-G solvation = -0.550391 kcal Electronic energy + Delta-G solvation = -16762.365408 eV Core-core repulsion = 13841.992315 eV Total energy + Delta-G solvation = -2920.373092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.68444 -38.31157 -36.36239 -34.39945 -33.46650 -32.36825 -30.63326 -29.59214 -27.32033 -24.15036 -22.53487 -22.40423 -20.85053 -19.18973 -17.56885 -16.42397 -15.98952 -15.50835 -15.09570 -14.96578 -14.32539 -14.08866 -13.85260 -13.52810 -13.17527 -12.89364 -12.44371 -11.98277 -11.89943 -11.46532 -11.45871 -11.20597 -11.00780 -10.90050 -10.75178 -10.33365 -9.75747 -9.44541 -9.21300 -8.79910 -8.62730 -7.93174 -7.81526 -6.19516 -4.26861 0.84992 1.48750 1.98593 2.24510 3.23174 3.28278 3.29581 3.88074 3.91848 4.12052 4.36979 4.74737 4.96119 5.16612 5.17364 5.29036 5.37744 5.52419 5.58653 5.86507 5.98836 6.16258 6.29072 6.39781 6.55758 6.74028 6.98647 7.27573 7.38611 7.47492 7.63552 7.93666 8.58248 8.74407 9.05637 9.39944 10.90547 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034967 B = 0.003843 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.573172 B = 7284.177259 C = 7720.006380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.703 5.703 11 C 0.516 3.484 12 O -0.543 6.543 13 C -0.190 4.190 14 C -0.050 4.050 15 C -0.051 4.051 16 C -0.022 4.022 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.050 4.050 20 Cl -0.087 7.087 21 C -0.095 4.095 22 H 0.267 0.733 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.391 0.609 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 -16.697 -2.336 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.303 3.697 12 O -0.424 6.424 13 C -0.211 4.211 14 C -0.069 4.069 15 C -0.051 4.051 16 C -0.040 4.040 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.076 4.076 20 Cl -0.058 7.058 21 C -0.114 4.114 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.224 0.776 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.731 -16.763 -2.261 17.003 hybrid contribution 0.842 1.097 0.258 1.407 sum 2.574 -15.665 -2.003 16.001 Atomic orbital electron populations 1.69964 1.06108 1.27456 1.48703 1.24949 0.94913 0.99452 0.94633 0.86474 0.79428 0.82307 0.78704 1.20055 1.21042 1.20052 1.21191 0.93231 0.90499 1.53491 0.91957 1.19110 0.88288 0.81931 0.97774 1.46506 1.11184 1.06294 1.70963 1.18454 0.88789 0.83790 0.78683 1.90836 1.16316 1.84290 1.50967 1.23296 0.99876 0.93544 1.04336 1.22196 0.93629 0.96406 0.94717 1.18756 0.93919 0.95686 0.96787 1.21228 0.94879 0.93857 0.94029 1.20919 0.94475 0.97664 1.00872 1.21021 0.99979 0.95516 0.95484 1.20601 0.93116 0.94926 0.99001 1.98337 1.74055 1.52318 1.81084 1.20971 0.92552 0.98040 0.99865 0.92364 0.95431 0.95449 0.77644 0.85133 0.84868 0.86053 0.85360 0.85559 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.70 -14.31 5.54 -62.88 -0.35 -14.66 16 11 C 0.52 9.83 6.74 -12.96 -0.09 9.74 16 12 O -0.54 -12.13 12.13 5.20 0.06 -12.07 16 13 C -0.19 -2.60 9.91 -37.50 -0.37 -2.97 16 14 C -0.05 -0.62 9.81 -37.15 -0.36 -0.98 16 15 C -0.05 -0.75 4.57 -105.06 -0.48 -1.23 16 16 C -0.02 -0.34 6.58 -39.11 -0.26 -0.60 16 17 C -0.12 -1.78 10.03 -39.65 -0.40 -2.17 16 18 C -0.10 -1.40 9.82 -39.43 -0.39 -1.79 16 19 C -0.05 -0.70 6.31 -39.56 -0.25 -0.95 16 20 Cl -0.09 -1.07 28.95 -51.86 -1.50 -2.57 16 21 C -0.10 -1.32 9.57 -39.08 -0.37 -1.69 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.39 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.99 6.93 -52.49 -0.36 1.62 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -31.13 291.98 -8.28 -39.41 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.20 Total: 4.42 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -3.41 Total: -9.43 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.39 Total: -39.76 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.13 -8.28 -39.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700866899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.862 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds