Wall clock time and date at job start Mon Mar 30 2020 06:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47138 * 239.99729 * 3 2 1 5 5 H 1.48498 * 109.47384 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47348 * 120.00126 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99845 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46543 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99311 * 180.02562 * 10 9 7 12 12 O 1.21692 * 120.00766 * 359.97438 * 11 10 9 13 13 C 1.46438 * 119.99653 * 179.97438 * 11 10 9 14 14 C 1.34800 * 120.00140 * 187.17031 * 13 11 10 15 15 C 1.47220 * 119.99859 * 11.19923 * 14 13 11 16 16 C 1.39857 * 120.16116 * 42.68124 * 15 14 13 17 17 C 1.37872 * 119.84925 * 179.97438 * 16 15 14 18 18 C 1.38404 * 120.18961 * 0.02562 * 17 16 15 19 19 C 1.38492 * 120.32753 * 359.74636 * 18 17 16 20 20 Cl 1.73594 * 119.92599 * 180.25734 * 19 18 17 21 21 C 1.38034 * 120.14369 * 0.50376 * 19 18 17 22 22 H 0.96991 * 119.99666 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47277 * 60.00067 * 9 7 2 24 24 H 1.08999 * 109.46968 * 299.99476 * 9 7 2 25 25 H 0.96995 * 120.00223 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.99573 * 7.17354 * 13 11 10 27 27 H 1.08000 * 120.00078 * 191.19360 * 14 13 11 28 28 H 1.07995 * 120.07316 * 0.02562 * 16 15 14 29 29 H 1.08001 * 119.90204 * 180.02562 * 17 16 15 30 30 H 1.07999 * 119.83361 * 180.02562 * 18 17 16 31 31 H 1.08000 * 120.09036 * 179.77217 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5574 -5.1058 0.0006 13 6 2.7054 -5.9964 0.0021 14 6 2.2632 -7.2614 -0.1439 15 6 0.8699 -7.5120 -0.5482 16 6 0.2825 -6.7440 -1.5586 17 6 -1.0226 -6.9845 -1.9325 18 6 -1.7520 -7.9828 -1.3105 19 6 -1.1764 -8.7510 -0.3123 20 17 -2.0987 -10.0048 0.4563 21 6 0.1276 -8.5185 0.0764 22 1 -0.4849 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 3.1568 -3.4354 0.0021 26 1 3.7616 -5.8037 0.1197 27 1 2.9309 -8.0910 0.0356 28 1 0.8501 -5.9648 -2.0455 29 1 -1.4769 -6.3922 -2.7130 30 1 -2.7738 -8.1666 -1.6082 31 1 0.5744 -9.1156 0.8575 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700866899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:46 Heat of formation + Delta-G solvation = -20.119558 kcal Electronic energy + Delta-G solvation = -16763.213990 eV Core-core repulsion = 13841.992315 eV Total energy + Delta-G solvation = -2921.221675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00829 -39.63089 -37.42604 -36.17124 -34.68415 -34.32883 -31.74514 -30.83542 -29.18687 -25.68761 -24.10537 -23.54271 -22.31253 -20.63222 -18.97874 -18.04036 -17.38354 -17.01875 -16.52591 -16.31534 -15.91768 -15.60398 -15.13190 -14.67940 -14.42269 -14.14115 -14.02827 -13.86189 -13.53182 -12.94116 -12.70224 -12.54774 -12.52437 -12.30749 -12.21858 -11.79090 -11.50789 -10.88491 -10.78721 -10.66922 -9.92299 -9.55347 -9.06387 -8.29303 -6.45937 -0.26589 0.36373 0.86763 1.17409 1.42809 1.46595 1.54815 2.33858 2.46220 2.72160 2.79734 3.05730 3.72092 3.90404 4.09316 4.12658 4.24598 4.47209 4.51837 4.79932 4.92103 5.07011 5.09486 5.25318 5.26477 5.31074 5.43252 5.49673 5.64377 5.75914 5.85915 5.88378 6.65424 6.97604 7.23905 7.54799 8.82478 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034967 B = 0.003843 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.573172 B = 7284.177259 C = 7720.006380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.269 3.731 10 N -0.703 5.703 11 C 0.510 3.490 12 O -0.583 6.583 13 C -0.201 4.201 14 C -0.024 4.024 15 C -0.069 4.069 16 C -0.043 4.043 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.059 4.059 20 Cl -0.072 7.072 21 C -0.097 4.097 22 H 0.268 0.732 23 H -0.012 1.012 24 H -0.016 1.016 25 H 0.407 0.593 26 H 0.173 0.827 27 H 0.185 0.815 28 H 0.104 0.896 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -17.705 -1.854 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.101 0.899 9 C 0.146 3.854 10 N -0.352 5.352 11 C 0.300 3.700 12 O -0.466 6.466 13 C -0.221 4.221 14 C -0.043 4.043 15 C -0.069 4.069 16 C -0.062 4.062 17 C -0.154 4.154 18 C -0.125 4.125 19 C -0.085 4.085 20 Cl -0.043 7.043 21 C -0.116 4.116 22 H 0.077 0.923 23 H 0.006 0.994 24 H 0.002 0.998 25 H 0.243 0.757 26 H 0.191 0.809 27 H 0.202 0.798 28 H 0.123 0.877 29 H 0.152 0.848 30 H 0.162 0.838 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.052 -17.809 -1.781 18.351 hybrid contribution 0.010 1.259 0.093 1.262 sum 4.062 -16.550 -1.688 17.125 Atomic orbital electron populations 1.70133 1.08261 1.28576 1.49965 1.26052 0.95745 1.03867 0.93853 0.85231 0.77940 0.76701 0.79508 1.18609 1.21149 1.18698 1.21613 0.94301 0.90730 1.52935 0.89885 1.18477 0.88638 0.84321 0.93934 1.46224 1.11101 1.05739 1.72089 1.19412 0.89344 0.84368 0.76835 1.90823 1.18607 1.84881 1.52307 1.23235 1.00510 0.91537 1.06850 1.22707 0.92840 0.97337 0.91434 1.19111 0.95518 0.95693 0.96609 1.21264 0.95452 0.94197 0.95283 1.21123 0.94536 0.98300 1.01490 1.21246 1.00765 0.95129 0.95405 1.20803 0.93589 0.95205 0.98950 1.98339 1.73720 1.51527 1.80737 1.21269 0.92500 0.97788 1.00014 0.92299 0.99368 0.99772 0.75693 0.80947 0.79789 0.87750 0.84758 0.83811 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.56 -30.19 9.28 25.60 0.24 -29.96 16 8 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.66 5.43 85.63 0.46 15.13 16 10 N -0.70 -29.08 5.54 -471.06 -2.61 -31.69 16 11 C 0.51 19.59 6.74 86.38 0.58 20.18 16 12 O -0.58 -27.05 12.13 -4.32 -0.05 -27.11 16 13 C -0.20 -5.02 9.91 23.62 0.23 -4.78 16 14 C -0.02 -0.52 9.81 23.84 0.23 -0.28 16 15 C -0.07 -1.94 4.57 -20.15 -0.09 -2.03 16 16 C -0.04 -1.41 6.58 22.58 0.15 -1.26 16 17 C -0.14 -4.13 10.03 22.22 0.22 -3.91 16 18 C -0.11 -2.93 9.82 22.37 0.22 -2.71 16 19 C -0.06 -1.58 6.31 22.28 0.14 -1.43 16 20 Cl -0.07 -1.67 28.95 -2.72 -0.08 -1.74 16 21 C -0.10 -2.51 9.57 22.60 0.22 -2.29 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H 0.41 13.83 8.30 -92.71 -0.77 13.06 16 26 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.10 3.62 6.93 -2.91 -0.02 3.60 16 29 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -70.94 291.98 3.02 -67.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.38 Total: 16.98 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 3.07 Total: -12.64 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.33 Total: -87.53 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.74 kcal Total: -70.94 3.02 -67.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700866899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.799 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds