Wall clock time and date at job start Mon Mar 30 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37433 * 123.39071 * 2 1 4 4 C 1.33854 * 115.12951 * 179.76583 * 3 2 1 5 5 S 1.70610 * 111.01472 * 0.49407 * 4 3 2 6 6 C 1.37044 * 123.38704 * 180.29594 * 2 1 3 7 7 C 1.41579 * 125.47435 * 0.02562 * 6 2 1 8 8 C 1.35657 * 119.99563 * 179.97438 * 7 6 2 9 9 C 1.41478 * 119.99800 * 179.97438 * 8 7 6 10 10 O 1.21788 * 119.99930 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00192 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00471 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.46915 * 325.00584 * 12 11 9 14 14 C 1.52996 * 109.47202 * 85.00224 * 12 11 9 15 15 C 1.50700 * 109.47552 * 205.00417 * 12 11 9 16 16 H 1.07995 * 119.99547 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99935 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00285 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99876 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47133 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47470 * 120.00290 * 19 17 15 22 22 H 1.48504 * 109.47230 * 240.00422 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.70227 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.70328 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.70309 * 1 2 3 26 26 H 1.08007 * 122.43335 * 0.02562 * 3 2 1 27 27 H 1.07996 * 124.49310 * 180.21871 * 4 3 2 28 28 H 1.07995 * 120.00202 * 0.02562 * 7 6 2 29 29 H 1.07998 * 120.00265 * 359.97438 * 8 7 6 30 30 H 0.97006 * 120.00047 * 0.02562 * 11 9 8 31 31 H 1.08998 * 109.47747 * 180.02562 * 14 12 11 32 32 H 1.08999 * 109.47232 * 300.00678 * 14 12 11 33 33 H 1.09001 * 109.47151 * 59.99957 * 14 12 11 34 34 H 0.97005 * 119.99764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9552 0.0050 5 16 3.9647 -0.7088 -0.0038 6 6 2.2612 -1.1443 -0.0059 7 6 1.7506 -2.4648 -0.0132 8 6 2.6018 -3.5210 -0.0192 9 6 2.0917 -4.8406 -0.0260 10 8 0.8884 -5.0282 -0.0269 11 7 2.9373 -5.8900 -0.0324 12 6 2.4091 -7.2564 -0.0388 13 1 1.4935 -7.2948 0.5515 14 6 2.1064 -7.6794 -1.4776 15 6 3.4297 -8.1924 0.5557 16 1 4.3768 -7.8077 0.9039 17 6 3.1538 -9.5395 0.6560 18 7 2.0001 -10.0078 0.2323 19 14 4.4185 -10.6995 1.3936 20 1 5.6248 -9.9294 1.7901 21 1 3.8414 -11.3662 2.5884 22 1 4.7953 -11.7253 0.3880 23 1 -0.3633 -0.0053 1.0277 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5092 26 1 1.8211 2.1328 0.0004 27 1 4.3211 1.7481 0.0091 28 1 0.6836 -2.6312 -0.0150 29 1 3.6689 -3.3546 -0.0187 30 1 3.8958 -5.7406 -0.0319 31 1 1.7130 -8.6959 -1.4825 32 1 1.3683 -7.0024 -1.9077 33 1 3.0219 -7.6409 -2.0679 34 1 1.8059 -10.9555 0.3033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701276764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:05 Heat of formation + Delta-G solvation = -0.966071 kcal Electronic energy + Delta-G solvation = -16819.544514 eV Core-core repulsion = 14037.030197 eV Total energy + Delta-G solvation = -2782.514317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18073 -38.47014 -34.94816 -33.73568 -32.34187 -30.73925 -29.14737 -27.24280 -25.23267 -24.01446 -22.50604 -20.39656 -19.38895 -18.83021 -17.22019 -16.92103 -15.87387 -15.24021 -15.16784 -14.35481 -14.33171 -13.93064 -13.50549 -13.28680 -12.91760 -12.51038 -12.39663 -12.33473 -11.92601 -11.79322 -11.65681 -11.06763 -10.96421 -10.80965 -10.73135 -10.37305 -10.25569 -10.21359 -9.11521 -9.00463 -8.56575 -8.53146 -8.10435 -7.75163 -6.10104 -4.19136 0.19085 1.45246 1.85952 1.86556 2.72157 3.25246 3.32910 3.35867 4.08660 4.22417 4.44797 4.71985 4.96887 5.03081 5.19237 5.22365 5.27084 5.43655 5.49879 5.74827 5.77345 5.84264 6.08873 6.26541 6.46875 6.49506 6.87187 7.00758 7.18982 7.49995 7.60843 7.73282 7.95320 8.17889 8.70616 8.81129 9.16706 9.48505 10.96003 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.003666 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.045253 B = 7635.601368 C = 8148.946754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.252 4.252 5 S 0.188 5.812 6 C -0.184 4.184 7 C -0.008 4.008 8 C -0.197 4.197 9 C 0.532 3.468 10 O -0.562 6.562 11 N -0.702 5.702 12 C 0.262 3.738 13 H 0.050 0.950 14 C -0.146 4.146 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.163 0.837 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.389 0.611 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 20.654 -1.056 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.169 4.169 4 C -0.389 4.389 5 S 0.458 5.542 6 C -0.302 4.302 7 C -0.029 4.029 8 C -0.220 4.220 9 C 0.320 3.680 10 O -0.445 6.445 11 N -0.349 5.349 12 C 0.160 3.840 13 H 0.067 0.933 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.180 0.820 28 H 0.163 0.837 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.108 0.892 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.347 19.508 -1.078 19.823 hybrid contribution 0.016 0.383 0.372 0.534 sum 3.364 19.891 -0.706 20.186 Atomic orbital electron populations 1.20545 0.89271 1.03147 1.02712 1.19624 0.97324 0.91170 1.01188 1.19829 0.92614 0.99441 1.05016 1.25165 1.00569 1.02102 1.11101 1.83153 1.05165 0.97570 1.68331 1.22522 0.96485 0.97119 1.14042 1.20639 1.00926 0.88292 0.93078 1.22289 0.99685 0.94070 1.05969 1.16912 0.87094 0.85433 0.78514 1.90784 1.14976 1.86885 1.51818 1.46501 1.08982 1.08115 1.71302 1.18758 0.95735 0.75481 0.94025 0.93258 1.22067 0.98095 1.02981 0.97343 1.21269 1.02092 0.92383 1.41380 0.92019 1.24894 0.95614 0.98072 0.95185 1.69921 1.21957 1.14254 1.45988 0.86393 0.81207 0.80653 0.78834 1.19737 1.20876 1.20888 0.90736 0.90826 0.91291 0.84445 0.81950 0.83675 0.86476 0.77860 0.89151 0.96609 0.95496 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.88 36.01 0.36 -0.54 16 2 C -0.08 -0.88 5.92 -105.35 -0.62 -1.51 16 3 C -0.14 -1.32 9.97 -41.41 -0.41 -1.73 16 4 C -0.25 -2.32 10.92 29.19 0.32 -2.00 16 5 S 0.19 1.98 21.77 -107.50 -2.34 -0.36 16 6 C -0.18 -2.31 6.21 -38.74 -0.24 -2.55 16 7 C -0.01 -0.11 8.94 -39.23 -0.35 -0.46 16 8 C -0.20 -3.17 9.30 -39.27 -0.37 -3.53 16 9 C 0.53 11.13 7.52 -15.03 -0.11 11.02 16 10 O -0.56 -13.84 15.77 5.11 0.08 -13.76 16 11 N -0.70 -15.21 5.06 -57.87 -0.29 -15.50 16 12 C 0.26 6.84 2.56 -69.09 -0.18 6.66 16 13 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 15 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 19 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.71 7.07 -51.93 -0.37 0.34 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 27 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.15 2.21 6.47 -52.49 -0.34 1.87 16 29 H 0.12 1.59 7.04 -52.49 -0.37 1.22 16 30 H 0.39 7.27 8.50 -40.82 -0.35 6.92 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -31.29 306.73 -8.19 -39.48 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.21 Total: 5.27 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.66 Total: -10.99 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.33 Total: -40.06 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.34 Total: -0.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.29 -8.19 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.518 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds