Wall clock time and date at job start Mon Mar 30 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37433 * 123.39071 * 2 1 4 4 C 1.33854 * 115.12951 * 179.76583 * 3 2 1 5 5 S 1.70610 * 111.01472 * 0.49407 * 4 3 2 6 6 C 1.37044 * 123.38704 * 180.29594 * 2 1 3 7 7 C 1.41579 * 125.47435 * 0.02562 * 6 2 1 8 8 C 1.35657 * 119.99563 * 179.97438 * 7 6 2 9 9 C 1.41478 * 119.99800 * 179.97438 * 8 7 6 10 10 O 1.21788 * 119.99930 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00192 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00471 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.46915 * 325.00584 * 12 11 9 14 14 C 1.52996 * 109.47202 * 85.00224 * 12 11 9 15 15 C 1.50700 * 109.47552 * 205.00417 * 12 11 9 16 16 H 1.07995 * 119.99547 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99935 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00285 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99876 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47133 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47470 * 120.00290 * 19 17 15 22 22 H 1.48504 * 109.47230 * 240.00422 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.70227 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.70328 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.70309 * 1 2 3 26 26 H 1.08007 * 122.43335 * 0.02562 * 3 2 1 27 27 H 1.07996 * 124.49310 * 180.21871 * 4 3 2 28 28 H 1.07995 * 120.00202 * 0.02562 * 7 6 2 29 29 H 1.07998 * 120.00265 * 359.97438 * 8 7 6 30 30 H 0.97006 * 120.00047 * 0.02562 * 11 9 8 31 31 H 1.08998 * 109.47747 * 180.02562 * 14 12 11 32 32 H 1.08999 * 109.47232 * 300.00678 * 14 12 11 33 33 H 1.09001 * 109.47151 * 59.99957 * 14 12 11 34 34 H 0.97005 * 119.99764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9552 0.0050 5 16 3.9647 -0.7088 -0.0038 6 6 2.2612 -1.1443 -0.0059 7 6 1.7506 -2.4648 -0.0132 8 6 2.6018 -3.5210 -0.0192 9 6 2.0917 -4.8406 -0.0260 10 8 0.8884 -5.0282 -0.0269 11 7 2.9373 -5.8900 -0.0324 12 6 2.4091 -7.2564 -0.0388 13 1 1.4935 -7.2948 0.5515 14 6 2.1064 -7.6794 -1.4776 15 6 3.4297 -8.1924 0.5557 16 1 4.3768 -7.8077 0.9039 17 6 3.1538 -9.5395 0.6560 18 7 2.0001 -10.0078 0.2323 19 14 4.4185 -10.6995 1.3936 20 1 5.6248 -9.9294 1.7901 21 1 3.8414 -11.3662 2.5884 22 1 4.7953 -11.7253 0.3880 23 1 -0.3633 -0.0053 1.0277 24 1 -0.3633 -0.8873 -0.5184 25 1 -0.3633 0.8927 -0.5092 26 1 1.8211 2.1328 0.0004 27 1 4.3211 1.7481 0.0091 28 1 0.6836 -2.6312 -0.0150 29 1 3.6689 -3.3546 -0.0187 30 1 3.8958 -5.7406 -0.0319 31 1 1.7130 -8.6959 -1.4825 32 1 1.3683 -7.0024 -1.9077 33 1 3.0219 -7.6409 -2.0679 34 1 1.8059 -10.9555 0.3033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701276764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:05 Heat of formation + Delta-G solvation = -20.471343 kcal Electronic energy + Delta-G solvation = -16820.390326 eV Core-core repulsion = 14037.030197 eV Total energy + Delta-G solvation = -2783.360129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77194 -39.41099 -36.82377 -34.97322 -34.30977 -31.71721 -30.87374 -28.37837 -27.34470 -25.07261 -23.71144 -22.10275 -20.95092 -19.92243 -18.69566 -18.06867 -17.45287 -17.03914 -16.28997 -15.98868 -15.78414 -15.00311 -14.95135 -14.49654 -14.22274 -14.08261 -13.70069 -13.39500 -13.15852 -12.97739 -12.88660 -12.83322 -12.73162 -12.57472 -12.28873 -12.11828 -11.64995 -11.43722 -11.09944 -10.86931 -10.60136 -9.79315 -9.35392 -8.96507 -8.17711 -6.35460 -0.81286 0.62001 0.84040 1.06912 1.44767 1.45239 1.57974 1.78894 2.37334 2.56690 2.76703 3.12725 3.91768 4.00875 4.05404 4.24036 4.35717 4.54917 4.66555 4.74439 4.80142 4.91568 4.96460 5.06382 5.08793 5.13952 5.24426 5.43167 5.51914 5.56310 5.61461 5.69979 5.92541 6.09432 6.72362 6.97180 7.31962 7.55219 8.89150 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.037322 B = 0.003666 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.045253 B = 7635.601368 C = 8148.946754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.060 4.060 3 C -0.153 4.153 4 C -0.230 4.230 5 S 0.198 5.802 6 C -0.239 4.239 7 C 0.032 3.968 8 C -0.234 4.234 9 C 0.533 3.467 10 O -0.612 6.612 11 N -0.702 5.702 12 C 0.268 3.732 13 H -0.002 1.002 14 C -0.133 4.133 15 C -0.547 4.547 16 H 0.073 0.927 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.277 1.277 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.166 0.834 27 H 0.194 0.806 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.405 0.595 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.040 0.960 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 23.287 -0.793 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.075 4.075 3 C -0.184 4.184 4 C -0.367 4.367 5 S 0.468 5.532 6 C -0.355 4.355 7 C 0.010 3.990 8 C -0.256 4.256 9 C 0.325 3.675 10 O -0.498 6.498 11 N -0.349 5.349 12 C 0.164 3.836 13 H 0.016 0.984 14 C -0.192 4.192 15 C -0.586 4.586 16 H 0.091 0.909 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.800 3.200 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.203 1.203 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.183 0.817 27 H 0.211 0.789 28 H 0.149 0.851 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.361 22.160 -0.819 22.814 hybrid contribution -0.678 -0.128 0.289 0.748 sum 4.683 22.032 -0.530 22.530 Atomic orbital electron populations 1.20669 0.88342 1.03841 1.03418 1.20046 0.98282 0.91275 0.97854 1.20123 0.92712 1.00097 1.05442 1.25666 1.01248 1.02026 1.07728 1.83148 1.03549 0.98647 1.67843 1.22476 0.98290 0.96378 1.18397 1.20659 1.00134 0.89364 0.88844 1.21919 1.01061 0.91418 1.11250 1.17550 0.86280 0.86860 0.76794 1.90746 1.17049 1.87723 1.54275 1.46234 1.09940 1.06747 1.72012 1.18372 0.93966 0.77908 0.93334 0.98360 1.21890 0.98398 1.01438 0.97425 1.21580 1.02499 0.92877 1.41595 0.90869 1.25837 0.97590 0.99833 0.95433 1.70070 1.23933 1.14719 1.46931 0.85249 0.78768 0.78235 0.77782 1.18358 1.20871 1.20301 0.89891 0.91924 0.88884 0.81652 0.78861 0.85090 0.83964 0.76024 0.91345 0.97009 0.94071 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.88 71.24 0.70 -0.99 16 2 C -0.06 -1.18 5.92 -20.33 -0.12 -1.30 16 3 C -0.15 -2.32 9.97 21.08 0.21 -2.11 16 4 C -0.23 -3.26 10.92 66.82 0.73 -2.53 16 5 S 0.20 3.67 21.77 -56.49 -1.23 2.44 16 6 C -0.24 -5.65 6.21 22.81 0.14 -5.51 16 7 C 0.03 0.94 8.94 22.50 0.20 1.14 16 8 C -0.23 -7.65 9.30 22.47 0.21 -7.44 16 9 C 0.53 23.29 7.52 85.04 0.64 23.93 16 10 O -0.61 -31.98 15.77 -4.63 -0.07 -32.05 16 11 N -0.70 -31.35 5.06 -455.20 -2.30 -33.66 16 12 C 0.27 14.57 2.56 44.24 0.11 14.69 16 13 H 0.00 -0.10 7.58 -2.38 -0.02 -0.11 16 14 C -0.13 -7.03 9.26 71.98 0.67 -6.36 16 15 C -0.55 -29.90 8.73 25.60 0.22 -29.68 16 16 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 19 Si 0.98 42.69 29.54 68.60 2.03 44.71 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.17 7.07 -2.39 -0.02 1.15 16 25 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 28 H 0.13 4.16 6.47 -2.91 -0.02 4.14 16 29 H 0.14 3.80 7.04 -2.91 -0.02 3.78 16 30 H 0.40 15.25 8.50 -92.70 -0.79 14.46 16 31 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -70.20 306.73 3.16 -67.04 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.33 Total: 20.01 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.17 Total: -15.00 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -2.06 Total: -87.16 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.07 Total: -32.05 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.23 Total: 2.44 kcal Total: -70.20 3.16 -67.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.568 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds