Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37442 * 123.38504 * 2 1 4 4 C 1.33860 * 115.12436 * 179.80725 * 3 2 1 5 5 S 1.70605 * 111.01654 * 0.44739 * 4 3 2 6 6 C 1.37035 * 123.39077 * 180.29288 * 2 1 3 7 7 C 1.41588 * 125.47665 * 359.97438 * 6 2 1 8 8 C 1.35648 * 119.99906 * 179.97438 * 7 6 2 9 9 C 1.41475 * 119.99810 * 179.97438 * 8 7 6 10 10 O 1.21780 * 120.00077 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99919 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99846 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46601 * 35.00603 * 12 11 9 14 14 C 1.52994 * 109.47199 * 275.00135 * 12 11 9 15 15 C 1.50699 * 109.46971 * 154.99910 * 12 11 9 16 16 H 1.08008 * 120.00057 * 35.00913 * 15 12 11 17 17 C 1.37876 * 120.00210 * 215.00284 * 15 12 11 18 18 N 1.31513 * 119.99819 * 184.91807 * 17 15 12 19 19 Si 1.86795 * 120.00051 * 4.91862 * 17 15 12 20 20 H 1.48500 * 109.46836 * 84.83015 * 19 17 15 21 21 H 1.48491 * 109.47117 * 204.83128 * 19 17 15 22 22 H 1.48498 * 109.46959 * 324.83483 * 19 17 15 23 23 H 1.09001 * 109.47281 * 269.70164 * 1 2 3 24 24 H 1.09003 * 109.47083 * 149.70784 * 1 2 3 25 25 H 1.09000 * 109.47684 * 29.70515 * 1 2 3 26 26 H 1.08002 * 122.43760 * 0.02562 * 3 2 1 27 27 H 1.07998 * 124.49057 * 180.22703 * 4 3 2 28 28 H 1.07993 * 119.99628 * 359.97438 * 7 6 2 29 29 H 1.08006 * 120.00374 * 0.02562 * 8 7 6 30 30 H 0.96996 * 120.00020 * 0.02562 * 11 9 8 31 31 H 1.08994 * 109.47764 * 295.03523 * 14 12 11 32 32 H 1.08999 * 109.47091 * 55.03998 * 14 12 11 33 33 H 1.09007 * 109.47034 * 175.03612 * 14 12 11 34 34 H 0.96999 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2632 1.1476 0.0000 4 6 3.5879 0.9553 0.0041 5 16 3.9646 -0.7086 -0.0042 6 6 2.2611 -1.1441 -0.0058 7 6 1.7506 -2.4648 -0.0121 8 6 2.6019 -3.5209 -0.0181 9 6 2.0918 -4.8405 -0.0237 10 8 0.8885 -5.0282 -0.0237 11 7 2.9376 -5.8899 -0.0302 12 6 2.4094 -7.2564 -0.0355 13 1 1.4921 -7.2889 -0.6235 14 6 2.1109 -7.6934 1.4000 15 6 3.4282 -8.1863 -0.6423 16 1 4.4819 -8.0129 -0.4802 17 6 3.0153 -9.2588 -1.4041 18 7 3.8974 -10.1249 -1.8528 19 14 1.2032 -9.4814 -1.7990 20 1 0.8547 -8.6746 -2.9959 21 1 0.9284 -10.9151 -2.0712 22 1 0.3860 -9.0314 -0.6436 23 1 -0.3634 -0.0054 1.0276 24 1 -0.3633 -0.8874 -0.5184 25 1 -0.3634 0.8926 -0.5092 26 1 1.8209 2.1329 0.0004 27 1 4.3210 1.7483 0.0082 28 1 0.6836 -2.6312 -0.0121 29 1 3.6690 -3.3545 -0.0177 30 1 3.8959 -5.7404 -0.0306 31 1 3.0416 -7.7457 1.9649 32 1 1.4419 -6.9712 1.8680 33 1 1.6365 -8.6747 1.3898 34 1 3.6069 -10.8796 -2.3885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701276766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = -1.263304 kcal Electronic energy + Delta-G solvation = -16894.852154 eV Core-core repulsion = 14112.324948 eV Total energy + Delta-G solvation = -2782.527206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29714 -38.52914 -35.05525 -33.79649 -32.33523 -30.84328 -29.81947 -27.39890 -25.29416 -24.06207 -22.53282 -20.26109 -19.52884 -18.93800 -17.31910 -17.10837 -16.13730 -15.41020 -15.26075 -14.38413 -14.26927 -14.00039 -13.49683 -13.32757 -13.04778 -12.52623 -12.49820 -12.42993 -12.32163 -11.96141 -11.80769 -11.47740 -11.08386 -10.83913 -10.78473 -10.57216 -10.39832 -9.86189 -9.24449 -9.17724 -8.68352 -8.59040 -8.21305 -7.87448 -6.21682 -4.25273 0.14961 1.42589 1.81467 1.83794 2.67739 3.28454 3.35821 3.43547 3.97675 4.16697 4.34712 4.69258 4.89610 4.99281 5.14435 5.18965 5.24078 5.39589 5.45799 5.70847 5.73962 5.77651 6.04794 6.22271 6.33621 6.43533 6.46547 6.56280 6.70988 6.97598 7.22924 7.41557 7.58485 8.16777 8.60318 8.78937 9.01605 9.40666 10.90123 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034212 B = 0.003995 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.237663 B = 7007.201857 C = 7391.516039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.251 4.251 5 S 0.192 5.808 6 C -0.187 4.187 7 C -0.004 4.004 8 C -0.199 4.199 9 C 0.533 3.467 10 O -0.567 6.567 11 N -0.697 5.697 12 C 0.229 3.771 13 H 0.051 0.949 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.890 5.890 19 Si 0.875 3.125 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.260 1.260 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.138 0.862 27 H 0.163 0.837 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.394 0.606 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.052 0.948 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 21.709 4.076 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.170 4.170 4 C -0.388 4.388 5 S 0.461 5.539 6 C -0.305 4.305 7 C -0.026 4.026 8 C -0.223 4.223 9 C 0.322 3.678 10 O -0.450 6.450 11 N -0.344 5.344 12 C 0.127 3.873 13 H 0.069 0.931 14 C -0.206 4.206 15 C -0.569 4.569 16 H 0.097 0.903 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.184 1.184 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.137 0.863 30 H 0.227 0.773 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.992 20.561 3.958 20.961 hybrid contribution -1.482 0.828 -0.307 1.725 sum -2.475 21.388 3.651 21.838 Atomic orbital electron populations 1.20543 0.89299 1.03170 1.02677 1.19620 0.97301 0.91181 1.01058 1.19833 0.92617 0.99445 1.05094 1.25185 1.00581 1.02160 1.10900 1.83182 1.05016 0.97516 1.68160 1.22517 0.96585 0.97084 1.14276 1.20641 1.00873 0.88342 0.92744 1.22253 0.99844 0.93880 1.06302 1.16992 0.87043 0.85581 0.78215 1.90770 1.15056 1.86972 1.52194 1.46600 1.09352 1.07282 1.71216 1.19133 0.96091 0.78370 0.93737 0.93141 1.22210 0.99745 0.99860 0.98762 1.21024 0.94094 1.09598 1.32137 0.90335 1.24941 0.97741 0.95255 0.94418 1.69885 1.34191 1.13427 1.35111 0.86883 0.85736 0.77241 0.80000 1.19847 1.21195 1.18450 0.90754 0.90857 0.91256 0.84428 0.81905 0.83720 0.86286 0.77275 0.93433 0.95188 0.92926 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.88 36.00 0.36 -0.51 16 2 C -0.08 -0.84 5.92 -105.35 -0.62 -1.47 16 3 C -0.14 -1.29 9.97 -41.41 -0.41 -1.71 16 4 C -0.25 -2.26 10.92 29.19 0.32 -1.94 16 5 S 0.19 1.98 21.77 -107.50 -2.34 -0.36 16 6 C -0.19 -2.29 6.21 -38.74 -0.24 -2.53 16 7 C 0.00 -0.06 8.94 -39.23 -0.35 -0.41 16 8 C -0.20 -3.11 9.30 -39.28 -0.37 -3.47 16 9 C 0.53 10.69 7.52 -15.02 -0.11 10.57 16 10 O -0.57 -13.25 15.77 5.12 0.08 -13.17 16 11 N -0.70 -14.53 5.06 -57.87 -0.29 -14.82 16 12 C 0.23 5.58 2.22 -69.09 -0.15 5.43 16 13 H 0.05 1.34 4.73 -51.93 -0.25 1.09 16 14 C -0.15 -3.29 9.47 37.15 0.35 -2.94 16 15 C -0.53 -14.45 9.05 -34.44 -0.31 -14.76 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 18 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 19 Si 0.87 21.83 26.99 -169.99 -4.59 17.24 16 20 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.40 6.82 56.52 0.39 -6.02 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.68 7.07 -51.93 -0.37 0.31 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.15 2.11 6.47 -52.49 -0.34 1.77 16 29 H 0.12 1.57 7.04 -52.48 -0.37 1.20 16 30 H 0.39 7.20 8.55 -40.82 -0.35 6.85 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -31.92 306.47 -7.59 -39.52 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.20 Total: 4.14 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.64 Total: -11.55 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.48 Total: -40.43 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.24 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.34 Total: -0.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.92 -7.59 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.253 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds