Wall clock time and date at job start Mon Mar 30 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37442 * 123.38504 * 2 1 4 4 C 1.33860 * 115.12436 * 179.80725 * 3 2 1 5 5 S 1.70605 * 111.01654 * 0.44739 * 4 3 2 6 6 C 1.37035 * 123.39077 * 180.29288 * 2 1 3 7 7 C 1.41588 * 125.47665 * 359.97438 * 6 2 1 8 8 C 1.35648 * 119.99906 * 179.97438 * 7 6 2 9 9 C 1.41475 * 119.99810 * 179.97438 * 8 7 6 10 10 O 1.21780 * 120.00077 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99919 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99846 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46601 * 35.00603 * 12 11 9 14 14 C 1.52994 * 109.47199 * 275.00135 * 12 11 9 15 15 C 1.50699 * 109.46971 * 154.99910 * 12 11 9 16 16 H 1.08008 * 120.00057 * 35.00913 * 15 12 11 17 17 C 1.37876 * 120.00210 * 215.00284 * 15 12 11 18 18 N 1.31513 * 119.99819 * 184.91807 * 17 15 12 19 19 Si 1.86795 * 120.00051 * 4.91862 * 17 15 12 20 20 H 1.48500 * 109.46836 * 84.83015 * 19 17 15 21 21 H 1.48491 * 109.47117 * 204.83128 * 19 17 15 22 22 H 1.48498 * 109.46959 * 324.83483 * 19 17 15 23 23 H 1.09001 * 109.47281 * 269.70164 * 1 2 3 24 24 H 1.09003 * 109.47083 * 149.70784 * 1 2 3 25 25 H 1.09000 * 109.47684 * 29.70515 * 1 2 3 26 26 H 1.08002 * 122.43760 * 0.02562 * 3 2 1 27 27 H 1.07998 * 124.49057 * 180.22703 * 4 3 2 28 28 H 1.07993 * 119.99628 * 359.97438 * 7 6 2 29 29 H 1.08006 * 120.00374 * 0.02562 * 8 7 6 30 30 H 0.96996 * 120.00020 * 0.02562 * 11 9 8 31 31 H 1.08994 * 109.47764 * 295.03523 * 14 12 11 32 32 H 1.08999 * 109.47091 * 55.03998 * 14 12 11 33 33 H 1.09007 * 109.47034 * 175.03612 * 14 12 11 34 34 H 0.96999 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2632 1.1476 0.0000 4 6 3.5879 0.9553 0.0041 5 16 3.9646 -0.7086 -0.0042 6 6 2.2611 -1.1441 -0.0058 7 6 1.7506 -2.4648 -0.0121 8 6 2.6019 -3.5209 -0.0181 9 6 2.0918 -4.8405 -0.0237 10 8 0.8885 -5.0282 -0.0237 11 7 2.9376 -5.8899 -0.0302 12 6 2.4094 -7.2564 -0.0355 13 1 1.4921 -7.2889 -0.6235 14 6 2.1109 -7.6934 1.4000 15 6 3.4282 -8.1863 -0.6423 16 1 4.4819 -8.0129 -0.4802 17 6 3.0153 -9.2588 -1.4041 18 7 3.8974 -10.1249 -1.8528 19 14 1.2032 -9.4814 -1.7990 20 1 0.8547 -8.6746 -2.9959 21 1 0.9284 -10.9151 -2.0712 22 1 0.3860 -9.0314 -0.6436 23 1 -0.3634 -0.0054 1.0276 24 1 -0.3633 -0.8874 -0.5184 25 1 -0.3634 0.8926 -0.5092 26 1 1.8209 2.1329 0.0004 27 1 4.3210 1.7483 0.0082 28 1 0.6836 -2.6312 -0.0121 29 1 3.6690 -3.3545 -0.0177 30 1 3.8959 -5.7404 -0.0306 31 1 3.0416 -7.7457 1.9649 32 1 1.4419 -6.9712 1.8680 33 1 1.6365 -8.6747 1.3898 34 1 3.6069 -10.8796 -2.3885 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701276766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:07 Heat of formation + Delta-G solvation = -21.688175 kcal Electronic energy + Delta-G solvation = -16895.737843 eV Core-core repulsion = 14112.324948 eV Total energy + Delta-G solvation = -2783.412895 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82122 -39.41909 -36.83372 -34.97888 -34.37888 -32.00814 -31.22383 -28.43397 -27.33660 -25.06649 -23.65782 -21.91991 -21.06130 -19.98937 -19.00590 -18.13299 -17.64590 -17.06708 -16.30406 -15.89139 -15.82073 -15.07935 -14.94403 -14.55137 -14.46136 -14.17863 -13.99375 -13.40873 -13.31869 -13.13022 -13.03095 -12.84021 -12.79133 -12.57718 -12.44668 -11.87868 -11.64815 -11.44508 -11.23940 -10.92334 -10.81335 -9.84819 -9.36148 -8.97217 -8.39617 -6.45940 -0.81798 0.61813 0.83040 1.06632 1.29338 1.33200 1.44562 1.78111 2.27012 2.52686 2.60077 3.05754 3.90207 4.00527 4.05943 4.23937 4.32160 4.46932 4.56386 4.66487 4.72937 4.80296 4.82527 4.95515 5.05173 5.07773 5.15926 5.24497 5.38186 5.45120 5.51434 5.56501 5.75094 6.13461 6.58533 6.91372 7.20264 7.46018 8.75474 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.034212 B = 0.003995 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.237663 B = 7007.201857 C = 7391.516039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.059 4.059 3 C -0.154 4.154 4 C -0.230 4.230 5 S 0.195 5.805 6 C -0.239 4.239 7 C 0.034 3.966 8 C -0.237 4.237 9 C 0.536 3.464 10 O -0.608 6.608 11 N -0.701 5.701 12 C 0.232 3.768 13 H 0.030 0.970 14 C -0.140 4.140 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.033 3.967 18 N -0.930 5.930 19 Si 0.927 3.073 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.256 1.256 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.166 0.834 27 H 0.193 0.807 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.405 0.595 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 24.749 4.478 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.367 4.367 5 S 0.465 5.535 6 C -0.355 4.355 7 C 0.012 3.988 8 C -0.260 4.260 9 C 0.329 3.671 10 O -0.494 6.494 11 N -0.349 5.349 12 C 0.128 3.872 13 H 0.048 0.952 14 C -0.199 4.199 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.568 5.568 19 Si 0.752 3.248 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.181 1.181 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.183 0.817 27 H 0.210 0.790 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.240 0.760 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.411 23.607 4.369 24.049 hybrid contribution -1.316 0.206 -0.404 1.392 sum -2.727 23.813 3.965 24.294 Atomic orbital electron populations 1.20668 0.88230 1.03849 1.03484 1.20043 0.98319 0.91217 0.97800 1.20135 0.92688 1.00154 1.05423 1.25662 1.01280 1.02017 1.07766 1.83216 1.03764 0.98684 1.67839 1.22489 0.98128 0.96509 1.18413 1.20674 1.00233 0.89226 0.88650 1.21922 1.01055 0.91618 1.11378 1.17496 0.86276 0.86717 0.76658 1.90734 1.16683 1.87662 1.54336 1.46343 1.10160 1.06302 1.72070 1.18901 0.94345 0.79653 0.94290 0.95169 1.22101 1.00414 0.99765 0.97614 1.21199 0.93748 1.09955 1.31718 0.92530 1.25608 1.01262 0.95210 0.94641 1.69977 1.35985 1.14332 1.36516 0.86042 0.81487 0.77595 0.79659 1.20038 1.19996 1.18067 0.89743 0.91820 0.89008 0.81685 0.78971 0.84729 0.84243 0.75972 0.92378 0.94456 0.93239 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.88 71.23 0.70 -0.86 16 2 C -0.06 -1.11 5.92 -20.34 -0.12 -1.23 16 3 C -0.15 -2.26 9.97 21.09 0.21 -2.05 16 4 C -0.23 -3.23 10.92 66.82 0.73 -2.50 16 5 S 0.20 3.58 21.77 -56.49 -1.23 2.35 16 6 C -0.24 -5.43 6.21 22.81 0.14 -5.29 16 7 C 0.03 0.95 8.94 22.50 0.20 1.15 16 8 C -0.24 -7.37 9.30 22.47 0.21 -7.16 16 9 C 0.54 21.79 7.52 85.04 0.64 22.43 16 10 O -0.61 -28.93 15.77 -4.60 -0.07 -29.01 16 11 N -0.70 -29.55 5.06 -455.19 -2.30 -31.85 16 12 C 0.23 11.41 2.22 44.24 0.10 11.51 16 13 H 0.03 1.62 4.73 -2.39 -0.01 1.61 16 14 C -0.14 -6.25 9.47 71.98 0.68 -5.57 16 15 C -0.53 -29.27 9.05 25.60 0.23 -29.04 16 16 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 17 C 0.03 1.90 5.47 84.65 0.46 2.37 16 18 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 19 Si 0.93 45.45 26.99 68.60 1.85 47.30 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.26 -12.32 6.82 99.48 0.68 -11.64 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.10 7.07 -2.39 -0.02 1.08 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 27 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.14 3.95 6.47 -2.91 -0.02 3.93 16 29 H 0.14 3.63 7.04 -2.91 -0.02 3.61 16 30 H 0.41 15.02 8.55 -92.71 -0.79 14.23 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.21 306.47 3.03 -66.18 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.29 Total: 17.03 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 4.19 Total: -16.24 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.00 Total: -87.61 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.07 Total: -29.01 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.85 Total: 47.30 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.23 Total: 2.35 kcal Total: -69.21 3.03 -66.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.493 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds