Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37435 * 123.39163 * 2 1 4 4 C 1.33861 * 115.13013 * 180.29168 * 3 2 1 5 5 S 1.70606 * 111.01207 * 359.73139 * 4 3 2 6 6 C 1.37042 * 123.39062 * 179.78056 * 2 1 3 7 7 C 1.41582 * 125.47033 * 359.97438 * 6 2 1 8 8 C 1.35662 * 120.00186 * 131.42326 * 7 6 2 9 9 C 1.41472 * 119.99547 * 350.72337 * 8 7 6 10 10 O 1.21786 * 120.00233 * 354.38105 * 9 8 7 11 11 N 1.34772 * 120.00149 * 174.38099 * 9 8 7 12 12 C 1.46495 * 120.00516 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46841 * 35.00041 * 12 11 9 14 14 C 1.53000 * 109.47235 * 274.99825 * 12 11 9 15 15 C 1.50700 * 109.47590 * 154.99593 * 12 11 9 16 16 H 1.08006 * 119.99892 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00156 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00002 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99722 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46870 * 90.00428 * 19 17 15 21 21 H 1.48499 * 109.46950 * 210.00126 * 19 17 15 22 22 H 1.48496 * 109.47423 * 330.00532 * 19 17 15 23 23 H 1.09000 * 109.46539 * 270.22187 * 1 2 3 24 24 H 1.09001 * 109.46860 * 30.21778 * 1 2 3 25 25 H 1.08995 * 109.47190 * 150.21840 * 1 2 3 26 26 H 1.07996 * 122.43760 * 0.02562 * 3 2 1 27 27 H 1.07999 * 124.49509 * 179.72332 * 4 3 2 28 28 H 1.08004 * 120.00596 * 311.42306 * 7 6 2 29 29 H 1.07995 * 120.00251 * 170.99495 * 8 7 6 30 30 H 0.97006 * 119.99673 * 0.02562 * 11 9 8 31 31 H 1.09002 * 109.46695 * 60.00106 * 14 12 11 32 32 H 1.08995 * 109.47166 * 179.97438 * 14 12 11 33 33 H 1.08990 * 109.47408 * 300.00167 * 14 12 11 34 34 H 0.96998 * 119.99715 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5881 0.9551 -0.0062 5 16 3.9647 -0.7088 -0.0050 6 6 2.2612 -1.1442 0.0044 7 6 1.7506 -2.4647 0.0100 8 6 2.2307 -3.3813 -0.8674 9 6 3.0934 -2.9757 -1.9128 10 8 3.3237 -1.7927 -2.0878 11 7 3.6603 -3.8985 -2.7149 12 6 4.5541 -3.4786 -3.7970 13 1 5.1238 -2.6052 -3.4795 14 6 3.7262 -3.1253 -5.0342 15 6 5.5015 -4.6020 -4.1306 16 1 5.4434 -5.5357 -3.5908 17 6 6.4418 -4.4383 -5.1257 18 7 6.5123 -3.3016 -5.7833 19 14 7.6157 -5.8312 -5.5396 20 1 7.0143 -6.6891 -6.5921 21 1 8.8979 -5.2678 -6.0332 22 1 7.8680 -6.6441 -4.3228 23 1 -0.3632 0.0040 1.0277 24 1 -0.3633 0.8880 -0.5172 25 1 -0.3633 -0.8919 -0.5104 26 1 1.8212 2.1328 0.0004 27 1 4.3213 1.7481 -0.0114 28 1 0.9790 -2.7425 0.7127 29 1 1.9508 -4.4199 -0.7706 30 1 3.4766 -4.8407 -2.5757 31 1 3.0410 -2.3126 -4.7929 32 1 4.3911 -2.8125 -5.8392 33 1 3.1566 -3.9986 -5.3518 34 1 7.1740 -3.1864 -6.4831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701276768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = 16.363412 kcal Electronic energy + Delta-G solvation = -17589.332634 eV Core-core repulsion = 14807.569780 eV Total energy + Delta-G solvation = -2781.762854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30757 -37.83578 -34.95572 -33.27714 -32.34848 -30.34858 -29.05921 -26.86282 -25.22299 -23.62497 -22.34633 -20.31254 -19.35525 -18.53286 -17.26777 -16.10128 -15.90694 -15.16448 -14.80113 -14.22250 -14.02369 -13.91441 -13.36410 -12.92547 -12.79151 -12.38058 -12.28765 -11.97042 -11.73742 -11.61801 -11.37245 -11.06211 -10.91444 -10.71081 -10.40671 -10.28464 -10.21195 -9.56371 -9.00379 -8.95957 -8.53743 -8.11530 -7.64792 -7.22504 -6.09957 -4.19039 0.73276 1.94739 2.35026 2.58535 3.06303 3.25220 3.32090 3.34343 4.11701 4.26439 4.52587 5.16700 5.20627 5.22212 5.39614 5.53070 5.61066 5.70059 5.74050 5.90396 6.05009 6.21698 6.41994 6.47903 6.81037 6.87172 6.90748 7.02174 7.20315 7.52505 7.62210 7.74206 7.96325 8.18695 8.73498 8.82241 9.20597 9.48872 10.95896 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004911 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.778464 B = 5700.081335 C = 5931.044382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.272 4.272 5 S 0.282 5.718 6 C -0.189 4.189 7 C -0.005 4.005 8 C -0.204 4.204 9 C 0.515 3.485 10 O -0.541 6.541 11 N -0.702 5.702 12 C 0.265 3.735 13 H 0.049 0.951 14 C -0.145 4.145 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.387 0.613 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 3.067 12.401 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.183 4.183 4 C -0.410 4.410 5 S 0.556 5.444 6 C -0.307 4.307 7 C -0.027 4.027 8 C -0.228 4.228 9 C 0.303 3.697 10 O -0.423 6.423 11 N -0.349 5.349 12 C 0.163 3.837 13 H 0.067 0.933 14 C -0.204 4.204 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.521 5.521 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.219 0.781 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.536 3.209 12.085 14.599 hybrid contribution -0.782 -0.328 -0.496 0.982 sum -8.318 2.881 11.589 14.553 Atomic orbital electron populations 1.20390 0.90387 1.02426 1.01444 1.19254 0.96276 0.91222 1.03769 1.19537 0.92647 0.98756 1.07358 1.25180 1.00543 1.03134 1.12166 1.82930 1.03849 0.95861 1.61792 1.22240 0.97988 0.96571 1.13938 1.20517 0.95698 0.90294 0.96149 1.22459 1.02571 1.00216 0.97550 1.17205 0.81772 0.86889 0.83828 1.90930 1.62807 1.16432 1.72115 1.46557 1.46985 1.08640 1.32736 1.18701 0.86564 0.96435 0.82020 0.93296 1.22056 0.99057 0.97499 1.01791 1.21237 1.16618 0.99856 1.19419 0.92169 1.24886 0.97221 0.95908 0.95687 1.69908 1.35012 1.23933 1.23269 0.86468 0.80239 0.81866 0.78636 1.20583 1.21090 1.19866 0.91749 0.91838 0.91864 0.85612 0.82816 0.85030 0.85473 0.78089 0.96660 0.89291 0.95644 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.94 36.01 0.36 -0.65 16 2 C -0.09 -1.38 5.92 -105.35 -0.62 -2.00 16 3 C -0.15 -2.24 9.97 -41.41 -0.41 -2.65 16 4 C -0.27 -4.20 10.92 29.20 0.32 -3.88 16 5 S 0.28 4.75 19.59 -107.50 -2.11 2.65 16 6 C -0.19 -3.03 4.50 -38.74 -0.17 -3.21 16 7 C 0.00 -0.07 9.05 -39.23 -0.36 -0.42 16 8 C -0.20 -3.10 9.82 -39.27 -0.39 -3.48 16 9 C 0.51 10.32 7.14 -15.03 -0.11 10.21 16 10 O -0.54 -12.43 11.31 5.11 0.06 -12.37 16 11 N -0.70 -14.81 5.06 -57.88 -0.29 -15.10 16 12 C 0.26 6.79 2.56 -69.09 -0.18 6.62 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 15 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.72 7.63 -51.93 -0.40 0.33 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.39 7.07 8.50 -40.82 -0.35 6.73 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -30.98 301.87 -8.17 -39.15 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.37 Total: 5.52 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.61 Total: -15.64 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.33 Total: -39.57 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.06 Total: -12.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.11 Total: 2.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.98 -8.17 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.515 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds