Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37435 * 123.39163 * 2 1 4 4 C 1.33861 * 115.13013 * 180.29168 * 3 2 1 5 5 S 1.70606 * 111.01207 * 359.73139 * 4 3 2 6 6 C 1.37042 * 123.39062 * 179.78056 * 2 1 3 7 7 C 1.41582 * 125.47033 * 359.97438 * 6 2 1 8 8 C 1.35662 * 120.00186 * 131.42326 * 7 6 2 9 9 C 1.41472 * 119.99547 * 350.72337 * 8 7 6 10 10 O 1.21786 * 120.00233 * 354.38105 * 9 8 7 11 11 N 1.34772 * 120.00149 * 174.38099 * 9 8 7 12 12 C 1.46495 * 120.00516 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46841 * 35.00041 * 12 11 9 14 14 C 1.53000 * 109.47235 * 274.99825 * 12 11 9 15 15 C 1.50700 * 109.47590 * 154.99593 * 12 11 9 16 16 H 1.08006 * 119.99892 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00156 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00002 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99722 * 180.02562 * 17 15 12 20 20 H 1.48507 * 109.46870 * 90.00428 * 19 17 15 21 21 H 1.48499 * 109.46950 * 210.00126 * 19 17 15 22 22 H 1.48496 * 109.47423 * 330.00532 * 19 17 15 23 23 H 1.09000 * 109.46539 * 270.22187 * 1 2 3 24 24 H 1.09001 * 109.46860 * 30.21778 * 1 2 3 25 25 H 1.08995 * 109.47190 * 150.21840 * 1 2 3 26 26 H 1.07996 * 122.43760 * 0.02562 * 3 2 1 27 27 H 1.07999 * 124.49509 * 179.72332 * 4 3 2 28 28 H 1.08004 * 120.00596 * 311.42306 * 7 6 2 29 29 H 1.07995 * 120.00251 * 170.99495 * 8 7 6 30 30 H 0.97006 * 119.99673 * 0.02562 * 11 9 8 31 31 H 1.09002 * 109.46695 * 60.00106 * 14 12 11 32 32 H 1.08995 * 109.47166 * 179.97438 * 14 12 11 33 33 H 1.08990 * 109.47408 * 300.00167 * 14 12 11 34 34 H 0.96998 * 119.99715 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5881 0.9551 -0.0062 5 16 3.9647 -0.7088 -0.0050 6 6 2.2612 -1.1442 0.0044 7 6 1.7506 -2.4647 0.0100 8 6 2.2307 -3.3813 -0.8674 9 6 3.0934 -2.9757 -1.9128 10 8 3.3237 -1.7927 -2.0878 11 7 3.6603 -3.8985 -2.7149 12 6 4.5541 -3.4786 -3.7970 13 1 5.1238 -2.6052 -3.4795 14 6 3.7262 -3.1253 -5.0342 15 6 5.5015 -4.6020 -4.1306 16 1 5.4434 -5.5357 -3.5908 17 6 6.4418 -4.4383 -5.1257 18 7 6.5123 -3.3016 -5.7833 19 14 7.6157 -5.8312 -5.5396 20 1 7.0143 -6.6891 -6.5921 21 1 8.8979 -5.2678 -6.0332 22 1 7.8680 -6.6441 -4.3228 23 1 -0.3632 0.0040 1.0277 24 1 -0.3633 0.8880 -0.5172 25 1 -0.3633 -0.8919 -0.5104 26 1 1.8212 2.1328 0.0004 27 1 4.3213 1.7481 -0.0114 28 1 0.9790 -2.7425 0.7127 29 1 1.9508 -4.4199 -0.7706 30 1 3.4766 -4.8407 -2.5757 31 1 3.0410 -2.3126 -4.7929 32 1 4.3911 -2.8125 -5.8392 33 1 3.1566 -3.9986 -5.3518 34 1 7.1740 -3.1864 -6.4831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701276768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = -2.746742 kcal Electronic energy + Delta-G solvation = -17590.161313 eV Core-core repulsion = 14807.569780 eV Total energy + Delta-G solvation = -2782.591532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81834 -39.05983 -36.78314 -34.57557 -34.27116 -31.56102 -30.77902 -28.09534 -27.31825 -24.92783 -23.69743 -22.05051 -20.91052 -19.79927 -18.75314 -17.82545 -17.38969 -16.83811 -16.24677 -15.67866 -15.61379 -15.25264 -14.52779 -14.43916 -14.31652 -13.82806 -13.70435 -13.38777 -13.08911 -12.95987 -12.83677 -12.75624 -12.68034 -12.41518 -12.25432 -12.11942 -11.62147 -11.08258 -10.86980 -10.60373 -10.39481 -9.74019 -8.92808 -8.60128 -8.16290 -6.33755 -0.46917 0.75604 1.13687 1.37911 1.44484 1.45196 1.55844 1.89840 2.38465 2.66859 2.90694 3.14124 4.08261 4.14030 4.25375 4.47241 4.53615 4.66562 4.74728 4.80966 4.90789 4.93768 5.09429 5.12544 5.15875 5.25956 5.34778 5.49961 5.64773 5.66095 5.73915 5.80783 5.98457 6.13032 6.75178 7.09293 7.34683 7.67877 8.89708 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004911 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.778464 B = 5700.081335 C = 5931.044382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.094 4.094 3 C -0.157 4.157 4 C -0.276 4.276 5 S 0.212 5.788 6 C -0.205 4.205 7 C 0.017 3.983 8 C -0.221 4.221 9 C 0.509 3.491 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.274 3.726 13 H -0.002 1.002 14 C -0.130 4.130 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.180 0.820 29 H 0.166 0.834 30 H 0.402 0.598 31 H 0.009 0.991 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 1.887 13.629 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.190 4.190 4 C -0.414 4.414 5 S 0.486 5.514 6 C -0.323 4.323 7 C -0.004 4.004 8 C -0.245 4.245 9 C 0.300 3.700 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.171 3.829 13 H 0.016 0.984 14 C -0.189 4.189 15 C -0.584 4.584 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.188 1.188 23 H 0.109 0.891 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.186 0.814 28 H 0.197 0.803 29 H 0.184 0.816 30 H 0.236 0.764 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.343 2.007 13.344 16.412 hybrid contribution -0.283 0.213 -0.816 0.889 sum -9.625 2.220 12.528 15.954 Atomic orbital electron populations 1.20494 0.87599 1.03060 1.03349 1.19785 0.98262 0.90697 1.02001 1.19962 0.92464 1.00144 1.06399 1.25400 1.01490 1.02300 1.12206 1.83140 1.06535 0.98106 1.63665 1.22566 0.96758 0.98209 1.14816 1.21036 0.95050 0.88740 0.95595 1.22433 1.02646 1.02552 0.96840 1.17995 0.81555 0.86147 0.84348 1.90931 1.63972 1.18017 1.73054 1.46298 1.46945 1.09775 1.32289 1.18232 0.87001 0.94575 0.83136 0.98370 1.21866 0.98346 0.97616 1.01101 1.21568 1.16946 1.00323 1.19536 0.91043 1.25802 0.98930 0.98328 0.95544 1.70064 1.35785 1.26048 1.23809 0.85354 0.77644 0.78681 0.78706 1.19657 1.21253 1.18803 0.89056 0.90934 0.91548 0.83135 0.81371 0.80276 0.81613 0.76355 0.97210 0.91756 0.94403 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.94 71.24 0.71 -0.98 16 2 C -0.09 -2.63 5.92 -20.33 -0.12 -2.75 16 3 C -0.16 -4.46 9.97 21.08 0.21 -4.25 16 4 C -0.28 -8.54 10.92 66.82 0.73 -7.81 16 5 S 0.21 7.35 19.59 -56.49 -1.11 6.24 16 6 C -0.21 -6.32 4.50 22.81 0.10 -6.22 16 7 C 0.02 0.43 9.05 22.50 0.20 0.63 16 8 C -0.22 -6.23 9.82 22.47 0.22 -6.01 16 9 C 0.51 20.39 7.14 85.04 0.61 21.00 16 10 O -0.58 -27.21 11.31 -4.62 -0.05 -27.26 16 11 N -0.70 -29.82 5.06 -455.20 -2.30 -32.12 16 12 C 0.27 14.50 2.56 44.25 0.11 14.61 16 13 H 0.00 -0.10 7.58 -2.38 -0.02 -0.12 16 14 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 15 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 16 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 17 C 0.01 0.75 5.30 84.66 0.45 1.20 16 18 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 19 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.27 7.63 -2.39 -0.02 1.25 16 26 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.40 14.32 8.50 -92.70 -0.79 13.54 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -69.49 301.87 3.24 -66.25 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.32 Total: 21.53 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.11 Total: -25.82 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.06 Total: -85.43 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 7.35 SS G_CDS: -1.11 Total: 6.24 kcal Total: -69.49 3.24 -66.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.500 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds