Wall clock time and date at job start Mon Mar 30 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37426 * 123.38631 * 2 1 4 4 C 1.33853 * 115.12870 * 179.97438 * 3 2 1 5 5 S 1.70605 * 111.01478 * 0.02562 * 4 3 2 6 6 C 1.37034 * 123.38761 * 179.70534 * 2 1 3 7 7 C 1.41589 * 125.47896 * 0.02562 * 6 2 1 8 8 C 1.35648 * 120.00494 * 227.83994 * 7 6 2 9 9 C 1.41477 * 119.99719 * 9.67021 * 8 7 6 10 10 O 1.21786 * 120.00131 * 7.13064 * 9 8 7 11 11 N 1.34773 * 119.99898 * 187.14065 * 9 8 7 12 12 C 1.46501 * 120.00103 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47218 * 324.99858 * 12 11 9 14 14 C 1.53000 * 109.47132 * 84.99551 * 12 11 9 15 15 C 1.50699 * 109.47208 * 204.99450 * 12 11 9 16 16 H 1.07997 * 120.00018 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00011 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00232 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46716 * 90.00583 * 19 17 15 21 21 H 1.48500 * 109.46659 * 209.99911 * 19 17 15 22 22 H 1.48492 * 109.47288 * 330.00105 * 19 17 15 23 23 H 1.09005 * 109.46999 * 90.02948 * 1 2 3 24 24 H 1.08996 * 109.47402 * 330.02470 * 1 2 3 25 25 H 1.08996 * 109.47121 * 210.02483 * 1 2 3 26 26 H 1.08004 * 122.43713 * 359.97438 * 3 2 1 27 27 H 1.08003 * 124.49520 * 179.97438 * 4 3 2 28 28 H 1.08002 * 119.99874 * 47.84077 * 7 6 2 29 29 H 1.07999 * 120.00255 * 189.66821 * 8 7 6 30 30 H 0.97000 * 120.00235 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47619 * 299.99901 * 14 12 11 32 32 H 1.08999 * 109.47318 * 60.00044 * 14 12 11 33 33 H 1.08997 * 109.47174 * 179.97438 * 14 12 11 34 34 H 0.96998 * 120.00231 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.1475 0.0000 4 6 3.5879 0.9552 0.0005 5 16 3.9647 -0.7087 0.0004 6 6 2.2611 -1.1442 0.0059 7 6 1.7507 -2.4648 0.0122 8 6 2.2412 -3.3775 0.8876 9 6 3.1097 -2.9661 1.9258 10 8 3.3144 -1.7805 2.1146 11 7 3.7107 -3.8863 2.7059 12 6 4.6105 -3.4604 3.7807 13 1 5.1542 -2.5691 3.4676 14 6 3.7932 -3.1447 5.0350 15 6 5.5893 -4.5653 4.0839 16 1 5.5458 -5.4920 3.5310 17 6 6.5411 -4.3928 5.0664 18 7 6.5945 -3.2642 5.7394 19 14 7.7549 -5.7624 5.4417 20 1 8.9618 -5.6007 4.5916 21 1 8.1455 -5.6990 6.8730 22 1 7.1223 -7.0757 5.1589 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 0.8902 0.5134 25 1 -0.3633 -0.8897 0.5142 26 1 1.8209 2.1328 -0.0004 27 1 4.3211 1.7483 0.0002 28 1 0.9707 -2.7455 -0.6801 29 1 1.9687 -4.4182 0.7920 30 1 3.5475 -4.8306 2.5558 31 1 3.0852 -2.3454 4.8158 32 1 3.2495 -4.0359 5.3482 33 1 4.4627 -2.8282 5.8348 34 1 7.2639 -3.1430 6.4309 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701276770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:10 Heat of formation + Delta-G solvation = -3.136531 kcal Electronic energy + Delta-G solvation = -17587.762219 eV Core-core repulsion = 14805.153784 eV Total energy + Delta-G solvation = -2782.608435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81620 -39.06822 -36.78060 -34.58383 -34.26927 -31.56410 -30.77886 -28.09934 -27.31808 -24.93252 -23.70137 -22.05137 -20.90564 -19.79658 -18.75915 -17.82831 -17.38794 -16.84087 -16.24792 -15.69114 -15.61680 -15.23585 -14.53242 -14.43440 -14.32325 -13.82663 -13.70544 -13.38200 -13.08583 -12.93874 -12.86176 -12.75375 -12.71330 -12.41495 -12.24494 -12.10124 -11.62755 -11.09292 -10.87190 -10.60316 -10.40518 -9.73807 -8.93063 -8.63431 -8.16272 -6.33705 -0.47319 0.75401 1.12002 1.37286 1.44614 1.45044 1.55891 1.89216 2.38457 2.66768 2.90527 3.14210 4.07855 4.13514 4.25273 4.46790 4.53295 4.66304 4.74690 4.80791 4.90780 4.93868 5.09096 5.12636 5.15803 5.25375 5.34631 5.49937 5.64182 5.66111 5.73935 5.80367 5.98449 6.13052 6.75252 7.09345 7.34710 7.67852 8.89781 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.004921 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.630641 B = 5688.175257 C = 5921.585655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.094 4.094 3 C -0.156 4.156 4 C -0.274 4.274 5 S 0.205 5.795 6 C -0.203 4.203 7 C 0.017 3.983 8 C -0.221 4.221 9 C 0.509 3.491 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.274 3.726 13 H -0.002 1.002 14 C -0.130 4.130 15 C -0.545 4.545 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.167 0.833 30 H 0.402 0.598 31 H 0.009 0.991 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 1.794 -13.576 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.189 4.189 4 C -0.412 4.412 5 S 0.478 5.522 6 C -0.321 4.321 7 C -0.005 4.005 8 C -0.245 4.245 9 C 0.300 3.700 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.171 3.829 13 H 0.016 0.984 14 C -0.189 4.189 15 C -0.584 4.584 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.183 1.183 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.186 0.814 28 H 0.198 0.802 29 H 0.184 0.816 30 H 0.237 0.763 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.524 1.915 -13.285 16.457 hybrid contribution -0.228 0.238 0.783 0.849 sum -9.752 2.153 -12.502 16.001 Atomic orbital electron populations 1.20497 0.87553 1.03092 1.03367 1.19790 0.98290 0.90693 1.01966 1.19971 0.92451 1.00179 1.06257 1.25379 1.01482 1.02181 1.12178 1.83167 1.06659 0.98310 1.64024 1.22555 0.96640 0.98248 1.14655 1.21033 0.95178 0.88740 0.95519 1.22438 1.02522 1.02549 0.96954 1.17977 0.81582 0.86160 0.84290 1.90924 1.64884 1.17850 1.72337 1.46293 1.46044 1.09633 1.33363 1.18231 0.86927 0.94532 0.83256 0.98401 1.21866 0.98286 0.97698 1.01082 1.21568 1.15393 1.01468 1.19931 0.91026 1.25802 0.99206 0.98191 0.95407 1.70062 1.35471 1.26349 1.23833 0.85359 0.78612 0.79307 0.77139 1.20364 1.20982 1.18350 0.89037 0.90912 0.91521 0.83071 0.81352 0.80242 0.81574 0.76346 0.97203 0.94377 0.91764 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.94 71.24 0.71 -0.97 16 2 C -0.09 -2.62 5.92 -20.34 -0.12 -2.74 16 3 C -0.16 -4.42 9.97 21.08 0.21 -4.21 16 4 C -0.27 -8.49 10.92 66.82 0.73 -7.76 16 5 S 0.20 7.12 19.66 -56.49 -1.11 6.01 16 6 C -0.20 -6.25 4.48 22.81 0.10 -6.15 16 7 C 0.02 0.41 9.05 22.50 0.20 0.62 16 8 C -0.22 -6.24 9.82 22.47 0.22 -6.02 16 9 C 0.51 20.43 7.09 85.04 0.60 21.04 16 10 O -0.58 -27.32 11.45 -4.62 -0.05 -27.37 16 11 N -0.70 -29.85 5.06 -455.20 -2.30 -32.15 16 12 C 0.27 14.51 2.56 44.24 0.11 14.62 16 13 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 14 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 15 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 16 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 17 C 0.01 0.75 5.30 84.66 0.45 1.20 16 18 N -0.92 -53.59 11.32 21.45 0.24 -53.34 16 19 Si 0.97 42.48 29.54 68.60 2.03 44.50 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.27 7.63 -2.39 -0.02 1.25 16 26 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.40 14.34 8.50 -92.71 -0.79 13.55 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 34 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -69.65 302.00 3.23 -66.42 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.32 Total: 21.55 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.11 Total: -25.62 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.06 Total: -85.50 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -1.11 Total: 6.01 kcal Total: -69.65 3.23 -66.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.288 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds