Wall clock time and date at job start Mon Mar 30 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37437 * 123.38483 * 2 1 4 4 C 1.33857 * 115.12646 * 180.02562 * 3 2 1 5 5 S 1.70606 * 111.01914 * 0.02562 * 4 3 2 6 6 C 1.37037 * 123.39556 * 180.02562 * 2 1 3 7 7 C 1.41587 * 125.47063 * 359.71975 * 6 2 1 8 8 C 1.35655 * 120.00204 * 126.46985 * 7 6 2 9 9 C 1.41470 * 119.99657 * 351.07481 * 8 7 6 10 10 O 1.21784 * 120.00529 * 353.51520 * 9 8 7 11 11 N 1.34779 * 119.99974 * 173.50603 * 9 8 7 12 12 C 1.46502 * 120.00095 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47119 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47437 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00274 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99992 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99981 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47455 * 89.99904 * 18 16 14 20 20 H 1.48502 * 109.47398 * 209.99685 * 18 16 14 21 21 H 1.48495 * 109.47260 * 329.99731 * 18 16 14 22 22 H 1.09000 * 109.47569 * 269.97276 * 1 2 3 23 23 H 1.08998 * 109.47529 * 29.97672 * 1 2 3 24 24 H 1.09000 * 109.46787 * 149.97752 * 1 2 3 25 25 H 1.07998 * 122.43358 * 0.04395 * 3 2 1 26 26 H 1.08000 * 124.48984 * 180.02562 * 4 3 2 27 27 H 1.08007 * 119.99911 * 306.46022 * 7 6 2 28 28 H 1.07998 * 120.00072 * 171.08602 * 8 7 6 29 29 H 0.96999 * 119.99870 * 0.02562 * 11 9 8 30 30 H 1.08998 * 109.47302 * 299.99980 * 12 11 9 31 31 H 1.08997 * 109.47275 * 60.00410 * 12 11 9 32 32 H 1.09002 * 109.47493 * 300.00059 * 13 12 11 33 33 H 1.09011 * 109.47131 * 59.99819 * 13 12 11 34 34 H 0.97003 * 120.00220 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.1476 0.0000 4 6 3.5879 0.9553 -0.0005 5 16 3.9648 -0.7086 -0.0018 6 6 2.2613 -1.1441 -0.0005 7 6 1.7508 -2.4647 0.0045 8 6 2.1537 -3.3513 -0.9399 9 6 2.9322 -2.9118 -2.0363 10 8 3.1414 -1.7229 -2.1969 11 7 3.4425 -3.8089 -2.9031 12 6 4.2492 -3.3539 -4.0382 13 6 4.7026 -4.5629 -4.8589 14 6 5.5318 -4.0948 -6.0268 15 1 5.7173 -3.0404 -6.1693 16 6 6.0547 -5.0127 -6.9130 17 7 6.7788 -4.6042 -7.9320 18 14 5.7345 -6.8363 -6.6662 19 1 4.4930 -7.2226 -7.3837 20 1 6.8788 -7.6168 -7.2017 21 1 5.5772 -7.1196 -5.2170 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.8209 2.1328 0.0007 26 1 4.3210 1.7484 -0.0002 27 1 1.0407 -2.7663 0.7604 28 1 1.8800 -4.3926 -0.8548 29 1 3.2757 -4.7559 -2.7753 30 1 3.6527 -2.6915 -4.6655 31 1 5.1232 -2.8164 -3.6705 32 1 5.2993 -5.2249 -4.2313 33 1 3.8287 -5.1009 -5.2266 34 1 7.1463 -5.2499 -8.5557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701276783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:00 Heat of formation + Delta-G solvation = 12.104151 kcal Electronic energy + Delta-G solvation = -17040.004480 eV Core-core repulsion = 14258.056931 eV Total energy + Delta-G solvation = -2781.947549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71532 -38.10114 -35.11169 -33.64378 -32.78015 -30.67967 -30.07890 -27.44826 -25.12758 -23.44406 -22.18032 -20.73261 -19.74455 -18.64999 -17.33856 -16.91809 -16.17206 -15.28024 -15.01346 -14.75740 -14.39549 -14.11193 -13.59683 -13.34090 -13.15587 -13.01718 -12.60040 -12.50241 -12.13605 -11.96906 -11.63222 -11.47016 -11.18491 -10.69583 -10.38248 -10.24279 -9.96247 -9.79798 -9.42560 -9.27292 -8.64178 -8.55008 -8.01265 -7.73006 -6.10223 -4.10106 0.50022 1.58241 2.06361 2.30486 2.81320 3.25688 3.33277 3.34635 3.67281 3.84196 4.38462 4.88944 4.99641 5.08611 5.22795 5.29178 5.35292 5.49476 5.54193 5.62820 5.87987 5.94248 6.02965 6.18444 6.24678 6.28613 6.56819 6.59460 6.64680 6.82373 7.17981 7.25738 7.68376 7.99104 8.45133 8.65549 8.94408 9.50070 11.02921 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035400 B = 0.003983 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.773462 B = 7028.553839 C = 7375.030555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.260 4.260 5 S 0.244 5.756 6 C -0.183 4.183 7 C 0.005 3.995 8 C -0.207 4.207 9 C 0.523 3.477 10 O -0.532 6.532 11 N -0.722 5.722 12 C 0.132 3.868 13 C -0.022 4.022 14 C -0.522 4.522 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.882 3.118 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.130 0.870 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.394 0.606 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 4.675 19.856 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.176 4.176 4 C -0.398 4.398 5 S 0.516 5.484 6 C -0.301 4.301 7 C -0.016 4.016 8 C -0.231 4.231 9 C 0.312 3.688 10 O -0.412 6.412 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.060 4.060 14 C -0.560 4.560 15 H 0.093 0.907 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.148 0.852 26 H 0.175 0.825 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.228 0.772 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.718 4.693 19.554 22.335 hybrid contribution -1.444 -0.577 -0.223 1.571 sum -11.162 4.116 19.331 22.699 Atomic orbital electron populations 1.20416 0.90105 1.02642 1.01661 1.19283 0.96461 0.91079 1.03237 1.19621 0.92628 0.98990 1.06383 1.25080 1.00540 1.02385 1.11788 1.82875 1.04046 0.96979 1.64451 1.22180 0.97680 0.96634 1.13580 1.20603 0.94629 0.90244 0.96166 1.22363 1.03635 1.00655 0.96446 1.17194 0.80899 0.86690 0.84026 1.90964 1.59746 1.15800 1.74729 1.46322 1.52985 1.09656 1.28235 1.21453 0.93592 0.98577 0.85476 1.19794 0.96591 0.93772 0.95849 1.20930 1.31421 0.95845 1.07853 0.90670 1.25003 0.94521 0.98992 0.94789 1.69907 1.34684 1.34671 1.14486 0.86748 0.77985 0.85459 0.78851 1.20240 1.21279 1.19090 0.91530 0.91624 0.91771 0.85219 0.82538 0.84570 0.85040 0.77239 0.92078 0.92008 0.96055 0.96514 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.93 36.01 0.36 -0.52 16 2 C -0.09 -1.13 5.92 -105.35 -0.62 -1.75 16 3 C -0.14 -1.84 9.97 -41.41 -0.41 -2.25 16 4 C -0.26 -3.40 10.92 29.19 0.32 -3.09 16 5 S 0.24 3.42 20.20 -107.50 -2.17 1.25 16 6 C -0.18 -2.47 4.24 -38.74 -0.16 -2.63 16 7 C 0.01 0.06 9.05 -39.23 -0.35 -0.30 16 8 C -0.21 -2.50 9.83 -39.28 -0.39 -2.89 16 9 C 0.52 8.56 7.22 -15.03 -0.11 8.45 16 10 O -0.53 -10.34 12.08 5.11 0.06 -10.28 16 11 N -0.72 -12.02 5.55 -63.27 -0.35 -12.37 16 12 C 0.13 2.72 5.61 -4.04 -0.02 2.70 16 13 C -0.02 -0.52 4.16 -27.89 -0.12 -0.63 16 14 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 15 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 18 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.62 7.64 -51.93 -0.40 0.22 16 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.39 5.45 8.43 -40.82 -0.34 5.11 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 33 H 0.02 0.37 7.57 -51.92 -0.39 -0.02 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -33.00 303.93 -8.19 -41.19 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.48 Total: 2.01 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.94 Total: -16.11 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.42 Total: -39.13 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.17 Total: 1.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.00 -8.19 -41.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.296 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds