Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37437 * 123.38483 * 2 1 4 4 C 1.33857 * 115.12646 * 180.02562 * 3 2 1 5 5 S 1.70606 * 111.01914 * 0.02562 * 4 3 2 6 6 C 1.37037 * 123.39556 * 180.02562 * 2 1 3 7 7 C 1.41587 * 125.47063 * 359.71975 * 6 2 1 8 8 C 1.35655 * 120.00204 * 126.46985 * 7 6 2 9 9 C 1.41470 * 119.99657 * 351.07481 * 8 7 6 10 10 O 1.21784 * 120.00529 * 353.51520 * 9 8 7 11 11 N 1.34779 * 119.99974 * 173.50603 * 9 8 7 12 12 C 1.46502 * 120.00095 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47119 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47437 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99987 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00274 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99992 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99981 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47455 * 89.99904 * 18 16 14 20 20 H 1.48502 * 109.47398 * 209.99685 * 18 16 14 21 21 H 1.48495 * 109.47260 * 329.99731 * 18 16 14 22 22 H 1.09000 * 109.47569 * 269.97276 * 1 2 3 23 23 H 1.08998 * 109.47529 * 29.97672 * 1 2 3 24 24 H 1.09000 * 109.46787 * 149.97752 * 1 2 3 25 25 H 1.07998 * 122.43358 * 0.04395 * 3 2 1 26 26 H 1.08000 * 124.48984 * 180.02562 * 4 3 2 27 27 H 1.08007 * 119.99911 * 306.46022 * 7 6 2 28 28 H 1.07998 * 120.00072 * 171.08602 * 8 7 6 29 29 H 0.96999 * 119.99870 * 0.02562 * 11 9 8 30 30 H 1.08998 * 109.47302 * 299.99980 * 12 11 9 31 31 H 1.08997 * 109.47275 * 60.00410 * 12 11 9 32 32 H 1.09002 * 109.47493 * 300.00059 * 13 12 11 33 33 H 1.09011 * 109.47131 * 59.99819 * 13 12 11 34 34 H 0.97003 * 120.00220 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.1476 0.0000 4 6 3.5879 0.9553 -0.0005 5 16 3.9648 -0.7086 -0.0018 6 6 2.2613 -1.1441 -0.0005 7 6 1.7508 -2.4647 0.0045 8 6 2.1537 -3.3513 -0.9399 9 6 2.9322 -2.9118 -2.0363 10 8 3.1414 -1.7229 -2.1969 11 7 3.4425 -3.8089 -2.9031 12 6 4.2492 -3.3539 -4.0382 13 6 4.7026 -4.5629 -4.8589 14 6 5.5318 -4.0948 -6.0268 15 1 5.7173 -3.0404 -6.1693 16 6 6.0547 -5.0127 -6.9130 17 7 6.7788 -4.6042 -7.9320 18 14 5.7345 -6.8363 -6.6662 19 1 4.4930 -7.2226 -7.3837 20 1 6.8788 -7.6168 -7.2017 21 1 5.5772 -7.1196 -5.2170 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.8209 2.1328 0.0007 26 1 4.3210 1.7484 -0.0002 27 1 1.0407 -2.7663 0.7604 28 1 1.8800 -4.3926 -0.8548 29 1 3.2757 -4.7559 -2.7753 30 1 3.6527 -2.6915 -4.6655 31 1 5.1232 -2.8164 -3.6705 32 1 5.2993 -5.2249 -4.2313 33 1 3.8287 -5.1009 -5.2266 34 1 7.1463 -5.2499 -8.5557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701276783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = -9.749198 kcal Electronic energy + Delta-G solvation = -17040.952113 eV Core-core repulsion = 14258.056931 eV Total energy + Delta-G solvation = -2782.895182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95206 -39.10393 -36.68698 -34.80183 -34.66518 -32.18808 -31.27397 -28.55144 -26.76173 -24.56201 -23.40438 -22.46398 -20.92982 -19.68671 -19.00120 -18.40750 -17.34881 -16.48713 -16.37376 -16.27237 -15.94077 -15.31092 -14.90553 -14.73375 -14.44462 -14.32789 -13.86242 -13.43009 -13.34077 -13.15052 -12.99568 -12.82028 -12.47897 -12.16286 -12.12049 -11.76255 -11.70220 -11.51904 -10.96670 -10.79324 -10.51937 -9.96431 -9.02143 -8.81876 -8.30724 -6.38086 -0.47317 0.60683 1.06338 1.30754 1.38573 1.41438 1.52831 1.84078 2.36555 2.50131 2.54056 3.04371 4.01264 4.11342 4.14169 4.39505 4.44290 4.45518 4.50037 4.63120 4.74807 4.76535 4.88350 5.04936 5.13547 5.17367 5.22247 5.34786 5.41241 5.47451 5.61252 5.68394 5.74890 6.21975 6.67609 6.77260 7.26519 7.41399 8.86289 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.035400 B = 0.003983 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.773462 B = 7028.553839 C = 7375.030555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.097 4.097 3 C -0.153 4.153 4 C -0.270 4.270 5 S 0.193 5.807 6 C -0.197 4.197 7 C 0.019 3.981 8 C -0.217 4.217 9 C 0.518 3.482 10 O -0.570 6.570 11 N -0.716 5.716 12 C 0.149 3.851 13 C -0.012 4.012 14 C -0.540 4.540 15 H 0.026 0.974 16 C 0.004 3.996 17 N -0.952 5.952 18 Si 0.960 3.040 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.237 1.237 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.150 0.850 26 H 0.170 0.830 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.412 0.588 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 2.520 21.984 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.186 4.186 4 C -0.407 4.407 5 S 0.466 5.534 6 C -0.314 4.314 7 C -0.002 4.002 8 C -0.240 4.240 9 C 0.309 3.691 10 O -0.452 6.452 11 N -0.368 5.368 12 C 0.025 3.975 13 C -0.050 4.050 14 C -0.579 4.579 15 H 0.044 0.956 16 C -0.193 4.193 17 N -0.592 5.592 18 Si 0.782 3.218 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.160 1.160 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.167 0.833 26 H 0.188 0.812 27 H 0.198 0.802 28 H 0.190 0.810 29 H 0.248 0.752 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.169 2.531 21.719 25.024 hybrid contribution -0.680 0.304 -0.887 1.158 sum -12.849 2.835 20.832 24.639 Atomic orbital electron populations 1.20493 0.87766 1.03049 1.03309 1.19752 0.98201 0.90764 1.02242 1.20003 0.92602 1.00199 1.05754 1.25311 1.01330 1.02005 1.12075 1.82977 1.06159 0.98553 1.65700 1.22535 0.96742 0.98198 1.13948 1.21095 0.93962 0.88750 0.96375 1.22413 1.03605 1.02865 0.95156 1.17936 0.80498 0.86035 0.84633 1.90962 1.61074 1.17535 1.75654 1.46067 1.52693 1.10835 1.27174 1.20904 0.93043 0.97197 0.86357 1.19643 0.96406 0.94652 0.94282 1.21270 1.32520 0.93927 1.10140 0.95569 1.26100 0.93918 1.05238 0.94077 1.70081 1.36255 1.36920 1.15899 0.85519 0.78113 0.77565 0.80556 1.18940 1.21186 1.15957 0.89139 0.91098 0.91504 0.83262 0.81243 0.80203 0.80997 0.75182 0.94364 0.94193 0.94553 0.94732 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.93 71.24 0.71 -0.74 16 2 C -0.10 -2.31 5.92 -20.34 -0.12 -2.43 16 3 C -0.15 -3.77 9.97 21.08 0.21 -3.56 16 4 C -0.27 -7.09 10.92 66.82 0.73 -6.36 16 5 S 0.19 5.51 20.20 -56.49 -1.14 4.37 16 6 C -0.20 -5.00 4.24 22.81 0.10 -4.91 16 7 C 0.02 0.37 9.05 22.50 0.20 0.58 16 8 C -0.22 -4.55 9.83 22.47 0.22 -4.33 16 9 C 0.52 16.29 7.22 85.04 0.61 16.90 16 10 O -0.57 -22.31 12.08 -4.62 -0.06 -22.37 16 11 N -0.72 -22.79 5.55 -472.25 -2.62 -25.41 16 12 C 0.15 6.26 5.61 86.38 0.48 6.74 16 13 C -0.01 -0.55 4.16 29.85 0.12 -0.42 16 14 C -0.54 -31.39 9.66 25.60 0.25 -31.14 16 15 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 16 C 0.00 0.21 5.47 84.65 0.46 0.67 16 17 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 18 Si 0.96 42.64 27.47 68.60 1.88 44.52 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 22 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.08 7.64 -2.39 -0.02 1.06 16 25 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 26 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 27 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.41 10.12 8.43 -92.71 -0.78 9.34 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 33 H 0.03 1.45 7.57 -2.38 -0.02 1.44 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -75.01 303.93 2.61 -72.40 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.26 Total: 15.14 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.98 Total: -28.99 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -2.32 Total: -85.07 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.14 Total: 4.37 kcal Total: -75.01 2.61 -72.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701276783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.649 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds