Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37435 * 123.39024 * 2 1 4 4 C 1.33856 * 115.13319 * 180.32689 * 3 2 1 5 5 S 1.70611 * 111.01075 * 359.72062 * 4 3 2 6 6 C 1.37039 * 123.39236 * 179.80787 * 2 1 3 7 7 C 1.41588 * 125.47645 * 359.97438 * 6 2 1 8 8 C 1.35651 * 120.00222 * 227.73171 * 7 6 2 9 9 C 1.41474 * 119.99852 * 7.62982 * 8 7 6 10 10 O 1.21792 * 119.99896 * 5.80045 * 9 8 7 11 11 N 1.34773 * 120.00324 * 186.07640 * 9 8 7 12 12 C 1.46496 * 119.99677 * 359.72614 * 11 9 8 13 13 C 1.46494 * 120.00257 * 179.72744 * 11 9 8 14 14 C 1.50702 * 109.47514 * 90.00085 * 13 11 9 15 15 H 1.08004 * 119.99608 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00188 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00014 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00128 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99762 * 18 16 14 20 20 H 1.48501 * 109.47203 * 209.99989 * 18 16 14 21 21 H 1.48505 * 109.46881 * 329.99851 * 18 16 14 22 22 H 1.08998 * 109.47273 * 270.18082 * 1 2 3 23 23 H 1.08992 * 109.47262 * 30.19155 * 1 2 3 24 24 H 1.09004 * 109.46589 * 150.19080 * 1 2 3 25 25 H 1.08005 * 122.43685 * 0.04643 * 3 2 1 26 26 H 1.07993 * 124.49394 * 179.76097 * 4 3 2 27 27 H 1.08004 * 119.99821 * 47.71870 * 7 6 2 28 28 H 1.07998 * 120.00424 * 187.63707 * 8 7 6 29 29 H 1.08997 * 109.47338 * 90.00018 * 12 11 9 30 30 H 1.09005 * 109.47511 * 210.00059 * 12 11 9 31 31 H 1.09000 * 109.47345 * 330.00228 * 12 11 9 32 32 H 1.09009 * 109.47460 * 209.99959 * 13 11 9 33 33 H 1.09000 * 109.47297 * 329.99915 * 13 11 9 34 34 H 0.97004 * 119.99693 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9553 -0.0069 5 16 3.9647 -0.7087 -0.0062 6 6 2.2612 -1.1442 0.0038 7 6 1.7508 -2.4648 0.0088 8 6 2.2436 -3.3792 0.8812 9 6 3.1486 -2.9769 1.8915 10 8 3.4037 -1.7960 2.0455 11 7 3.7327 -3.9008 2.6799 12 6 3.4259 -5.3213 2.4947 13 6 4.6743 -3.4847 3.7221 14 6 3.9245 -3.2309 5.0045 15 1 2.8536 -3.3665 5.0397 16 6 4.6056 -2.8257 6.1327 17 7 5.9097 -2.6611 6.0899 18 14 3.6760 -2.5105 7.7220 19 1 3.6107 -3.7647 8.5144 20 1 4.3792 -1.4647 8.5076 21 1 2.2992 -2.0514 7.4075 22 1 -0.3634 0.0032 1.0276 23 1 -0.3633 0.8882 -0.5168 24 1 -0.3632 -0.8917 -0.5109 25 1 1.8211 2.1329 0.0007 26 1 4.3211 1.7483 -0.0116 27 1 0.9689 -2.7441 -0.6820 28 1 1.9452 -4.4143 0.8045 29 1 4.1257 -5.7540 1.7797 30 1 3.5148 -5.8398 3.4494 31 1 2.4089 -5.4271 2.1171 32 1 5.4110 -4.2722 3.8818 33 1 5.1808 -2.5712 3.4105 34 1 6.3889 -2.3763 6.8838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701277200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = 29.915138 kcal Electronic energy + Delta-G solvation = -17737.155287 eV Core-core repulsion = 14955.980080 eV Total energy + Delta-G solvation = -2781.175207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37201 -37.82378 -34.93264 -33.36272 -32.52749 -30.27997 -28.20423 -26.92320 -25.64636 -23.83373 -22.70329 -21.07402 -18.79361 -18.05860 -16.72457 -16.48260 -16.14544 -15.15744 -14.72958 -14.35618 -14.17384 -13.91306 -13.24179 -12.79624 -12.64006 -12.60536 -12.29261 -12.08344 -11.93472 -11.74063 -11.63412 -11.25699 -11.08029 -10.87313 -10.52882 -10.38821 -10.13692 -9.60574 -9.49112 -8.84925 -8.40558 -7.99459 -7.53498 -7.07280 -6.01006 -4.05476 0.77562 2.00198 2.39756 2.61899 3.10618 3.31524 3.38138 3.43237 4.06776 4.23443 4.48684 5.17551 5.22206 5.28441 5.34169 5.48594 5.57483 5.71791 5.75564 5.81303 5.90576 5.97161 6.09778 6.22068 6.27430 6.42942 6.49787 6.85110 6.93431 7.15224 7.49440 7.60644 7.95857 8.27618 8.49006 8.94470 9.16851 9.59446 11.06649 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.006028 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.194011 B = 4643.861078 C = 5001.156842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.273 4.273 5 S 0.286 5.714 6 C -0.194 4.194 7 C -0.003 4.003 8 C -0.209 4.209 9 C 0.519 3.481 10 O -0.526 6.526 11 N -0.596 5.596 12 C 0.082 3.918 13 C 0.245 3.755 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.126 0.874 26 H 0.154 0.846 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 -0.049 -14.632 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.184 4.184 4 C -0.411 4.411 5 S 0.561 5.439 6 C -0.312 4.312 7 C -0.025 4.025 8 C -0.233 4.233 9 C 0.309 3.691 10 O -0.407 6.407 11 N -0.327 5.327 12 C -0.062 4.062 13 C 0.126 3.874 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.172 0.828 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.733 -0.182 -14.423 15.521 hybrid contribution -1.813 0.950 1.281 2.415 sum -7.547 0.768 -13.142 15.174 Atomic orbital electron populations 1.20394 0.90407 1.01814 1.02002 1.19261 0.96278 0.91254 1.03547 1.19524 0.92656 0.98729 1.07487 1.25199 1.00532 1.03215 1.12141 1.82765 1.04058 0.95837 1.61282 1.22245 0.98046 0.96589 1.14310 1.20519 0.95704 0.90251 0.96031 1.22518 1.02460 1.00375 0.97898 1.17110 0.82121 0.86477 0.83427 1.90941 1.63143 1.16257 1.70368 1.48173 1.44578 1.05473 1.34486 1.21672 0.99432 0.83181 1.01925 1.19262 0.87451 0.96538 0.84154 1.21436 0.94262 1.45746 0.94692 0.92559 1.24925 0.94887 0.95314 0.98993 1.69935 1.06801 1.47256 1.29510 0.86519 0.80009 0.77914 0.83125 1.20658 1.21104 1.19931 0.91440 0.91990 0.92005 0.85629 0.82839 0.85054 0.85255 0.93822 0.90900 0.92307 0.95195 0.93705 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.94 36.01 0.36 -0.71 16 2 C -0.09 -1.42 5.92 -105.35 -0.62 -2.04 16 3 C -0.15 -2.36 9.97 -41.41 -0.41 -2.77 16 4 C -0.27 -4.36 10.92 29.19 0.32 -4.04 16 5 S 0.29 4.94 19.41 -107.50 -2.09 2.85 16 6 C -0.19 -3.23 4.57 -38.74 -0.18 -3.41 16 7 C 0.00 -0.05 9.14 -39.23 -0.36 -0.41 16 8 C -0.21 -3.34 9.13 -39.28 -0.36 -3.69 16 9 C 0.52 10.97 7.07 -15.03 -0.11 10.86 16 10 O -0.53 -12.83 11.03 5.11 0.06 -12.77 16 11 N -0.60 -12.93 2.86 -186.44 -0.53 -13.46 16 12 C 0.08 1.33 10.16 59.84 0.61 1.94 16 13 C 0.25 6.51 5.16 -5.20 -0.03 6.49 16 14 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 15 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.65 7.44 -51.93 -0.39 0.26 16 25 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.13 1.40 7.80 -52.48 -0.41 0.99 16 28 H 0.13 1.62 6.03 -52.49 -0.32 1.31 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 31 H 0.06 0.78 6.02 -51.93 -0.31 0.47 16 32 H 0.03 0.80 8.07 -51.92 -0.42 0.38 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -33.69 301.78 -7.81 -41.50 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.31 Total: -2.15 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.20 Total: -11.55 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.20 Total: -39.70 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.06 Total: -12.77 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -2.09 Total: 2.85 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.69 -7.81 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.414 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds